PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72601-72650 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4852 | 94.1121 | 94.8613 | 61.6630 | 3021 | 189 | 3009 | 163 | 146 | 89.5706 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.4276 | 75.0062 | 99.2121 | 42.1023 | 3022 | 1007 | 3022 | 24 | 22 | 91.6667 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 71.9561 | 72.9860 | 70.9549 | 92.4413 | 3026 | 1120 | 3039 | 1244 | 64 | 5.1447 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8731 | 98.0246 | 99.7364 | 69.1784 | 3027 | 61 | 3027 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | SNP | * | map_l125_m0_e0 | het | 38.5630 | 23.9024 | 99.7364 | 95.6908 | 3027 | 9637 | 3027 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 67.7466 | 98.0570 | 51.7501 | 74.5351 | 3028 | 60 | 3090 | 2881 | 75 | 2.6033 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6805 | 98.0570 | 99.3119 | 64.2623 | 3028 | 60 | 3031 | 21 | 11 | 52.3810 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4326 | 96.2516 | 80.0940 | 76.2162 | 3030 | 118 | 3066 | 762 | 11 | 1.4436 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | het | 62.8544 | 57.5608 | 69.2202 | 93.5567 | 3030 | 2234 | 3027 | 1346 | 41 | 3.0461 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8529 | 96.2516 | 93.4942 | 76.5691 | 3030 | 118 | 3061 | 213 | 10 | 4.6948 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | het | 97.4370 | 95.9481 | 98.9728 | 64.1950 | 3031 | 128 | 2987 | 31 | 14 | 45.1613 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.4099 | 82.2078 | 93.3149 | 53.2942 | 3031 | 656 | 3043 | 218 | 199 | 91.2844 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7140 | 98.1541 | 99.2803 | 63.6850 | 3031 | 57 | 3035 | 22 | 10 | 45.4545 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 82.3435 | 83.6876 | 81.0419 | 74.6270 | 3032 | 591 | 3018 | 706 | 302 | 42.7762 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 75.6587 | 80.6700 | 71.2335 | 62.4381 | 3034 | 727 | 2974 | 1201 | 1094 | 91.0908 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 75.6587 | 80.6700 | 71.2335 | 62.4381 | 3034 | 727 | 2974 | 1201 | 1094 | 91.0908 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.8732 | 68.2411 | 96.2857 | 80.2619 | 3034 | 1412 | 3033 | 117 | 59 | 50.4274 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | het | 98.2617 | 97.2756 | 99.2679 | 59.9547 | 3035 | 85 | 2983 | 22 | 18 | 81.8182 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3982 | 97.2756 | 99.5471 | 54.5040 | 3035 | 85 | 3077 | 14 | 13 | 92.8571 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8304 | 94.6417 | 97.0494 | 60.1686 | 3038 | 172 | 3026 | 92 | 90 | 97.8261 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9224 | 96.5693 | 99.3139 | 68.5406 | 3040 | 108 | 3040 | 21 | 10 | 47.6190 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | * | 70.0357 | 66.4337 | 74.0506 | 91.7565 | 3042 | 1537 | 3042 | 1066 | 196 | 18.3865 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | het | 97.5719 | 96.3280 | 98.8483 | 63.0112 | 3043 | 116 | 3004 | 35 | 15 | 42.8571 | |
| gduggal-snapplat | INDEL | D6_15 | HG002compoundhet | * | 47.6068 | 33.6951 | 81.0840 | 49.2004 | 3043 | 5988 | 2962 | 691 | 439 | 63.5311 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 85.7951 | 83.9912 | 87.6782 | 74.5242 | 3043 | 580 | 3814 | 536 | 514 | 95.8955 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.6160 | 82.5603 | 93.3313 | 53.0320 | 3044 | 643 | 3065 | 219 | 187 | 85.3881 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.3867 | 94.8287 | 97.9968 | 59.1527 | 3044 | 166 | 3033 | 62 | 60 | 96.7742 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.3819 | 93.7500 | 91.0531 | 69.7462 | 3045 | 203 | 3104 | 305 | 131 | 42.9508 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 78.1416 | 74.7118 | 81.9014 | 40.1032 | 3046 | 1031 | 3041 | 672 | 667 | 99.2560 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.3451 | 73.4925 | 96.2484 | 91.4731 | 3047 | 1099 | 3053 | 119 | 21 | 17.6471 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.4683 | 94.9844 | 97.9994 | 58.6524 | 3049 | 161 | 3037 | 62 | 60 | 96.7742 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.5000 | 95.0156 | 98.0316 | 58.6414 | 3050 | 160 | 3038 | 61 | 59 | 96.7213 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | het | 98.5474 | 97.7564 | 99.3513 | 51.5467 | 3050 | 70 | 2910 | 19 | 5 | 26.3158 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002complexvar | het | 97.7459 | 97.7564 | 97.7354 | 59.1947 | 3050 | 70 | 3021 | 70 | 62 | 88.5714 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | * | 72.9303 | 63.6686 | 85.3453 | 43.1989 | 3051 | 1741 | 3040 | 522 | 491 | 94.0613 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9708 | 98.8342 | 97.1223 | 75.2765 | 3052 | 36 | 3105 | 92 | 13 | 14.1304 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.0649 | 86.2878 | 98.6710 | 63.3131 | 3052 | 485 | 3044 | 41 | 24 | 58.5366 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.6938 | 96.4613 | 92.9899 | 50.7135 | 3053 | 112 | 3051 | 230 | 72 | 31.3043 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1727 | 98.8666 | 99.4807 | 69.4042 | 3053 | 35 | 3065 | 16 | 11 | 68.7500 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.2488 | 96.4929 | 90.2158 | 52.0822 | 3054 | 111 | 3052 | 331 | 137 | 41.3897 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | het | 96.1485 | 92.6948 | 99.8695 | 77.1012 | 3058 | 241 | 3061 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.6598 | 95.2648 | 96.0580 | 63.2518 | 3058 | 152 | 3046 | 125 | 116 | 92.8000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1544 | 97.1410 | 99.1891 | 68.9245 | 3058 | 90 | 3058 | 25 | 8 | 32.0000 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | het | 98.7528 | 98.0128 | 99.5040 | 56.9844 | 3058 | 62 | 3009 | 15 | 10 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | het | 96.8039 | 94.0074 | 99.7719 | 81.1683 | 3059 | 195 | 3062 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | D16_PLUS | * | het | 96.8499 | 96.8344 | 96.8654 | 63.8824 | 3059 | 100 | 5068 | 164 | 133 | 81.0976 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.3685 | 99.0609 | 93.8186 | 66.4004 | 3059 | 29 | 2565 | 169 | 32 | 18.9349 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.6316 | 99.0933 | 94.2892 | 74.2061 | 3060 | 28 | 3071 | 186 | 41 | 22.0430 | |