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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72601-72650 / 86044 show all
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.4852
94.1121
94.8613
61.6630
30211893009163146
89.5706
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
85.4276
75.0062
99.2121
42.1023
3022100730222422
91.6667
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.9561
72.9860
70.9549
92.4413
302611203039124464
5.1447
astatham-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.8731
98.0246
99.7364
69.1784
302761302787
87.5000
asubramanian-gatkSNP*map_l125_m0_e0het
38.5630
23.9024
99.7364
95.6908
30279637302785
62.5000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50het
67.7466
98.0570
51.7501
74.5351
3028603090288175
2.6033
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.6805
98.0570
99.3119
64.2623
30286030312111
52.3810
ghariani-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50het
87.4326
96.2516
80.0940
76.2162
3030118306676211
1.4436
ciseli-customSNP*map_l250_m2_e1het
62.8544
57.5608
69.2202
93.5567
303022343027134641
3.0461
jpowers-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50het
94.8529
96.2516
93.4942
76.5691
3030118306121310
4.6948
ltrigg-rtg1INDELD16_PLUS*het
97.4370
95.9481
98.9728
64.1950
303112829873114
45.1613
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
87.4099
82.2078
93.3149
53.2942
30316563043218199
91.2844
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.7140
98.1541
99.2803
63.6850
30315730352210
45.4545
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.3435
83.6876
81.0419
74.6270
30325913018706302
42.7762
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
75.6587
80.6700
71.2335
62.4381
3034727297412011094
91.0908
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
75.6587
80.6700
71.2335
62.4381
3034727297412011094
91.0908
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.8732
68.2411
96.2857
80.2619
30341412303311759
50.4274
asubramanian-gatkINDELD6_15HG002complexvarhet
98.2617
97.2756
99.2679
59.9547
30358529832218
81.8182
ltrigg-rtg2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.3982
97.2756
99.5471
54.5040
30358530771413
92.8571
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.8304
94.6417
97.0494
60.1686
303817230269290
97.8261
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_11to50het
65.3789
96.5057
49.4344
75.2664
30381103190326393
2.8501
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.9224
96.5693
99.3139
68.5406
304010830402110
47.6190
ciseli-customSNPtimap_l250_m1_e0*
70.0357
66.4337
74.0506
91.7565
3042153730421066196
18.3865
ltrigg-rtg2INDELD16_PLUS*het
97.5719
96.3280
98.8483
63.0112
304311630043515
42.8571
gduggal-snapplatINDELD6_15HG002compoundhet*
47.6068
33.6951
81.0840
49.2004
304359882962691439
63.5311
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
85.7951
83.9912
87.6782
74.5242
30435803814536514
95.8955
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
87.6160
82.5603
93.3313
53.0320
30446433065219187
85.3881
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3867
94.8287
97.9968
59.1527
304416630336260
96.7742
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.3819
93.7500
91.0531
69.7462
30452033104305131
42.9508
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.3451
73.4925
96.2484
91.4731
30471099305311921
17.6471
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.4683
94.9844
97.9994
58.6524
304916130376260
96.7742
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.5000
95.0156
98.0316
58.6414
305016030386159
96.7213
ltrigg-rtg1INDELD6_15HG002complexvarhet
98.5474
97.7564
99.3513
51.5467
3050702910195
26.3158
rpoplin-dv42INDELD6_15HG002complexvarhet
97.7459
97.7564
97.7354
59.1947
30507030217062
88.5714
gduggal-snapfbINDELI6_15HG002complexvar*
72.9303
63.6686
85.3453
43.1989
305117413040522491
94.0613
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.9708
98.8342
97.1223
75.2765
30523631059213
14.1304
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.0649
86.2878
98.6710
63.3131
305248530444124
58.5366
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.6938
96.4613
92.9899
50.7135
3053112305123072
31.3043
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.1727
98.8666
99.4807
69.4042
30533530651611
68.7500
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.2488
96.4929
90.2158
52.0822
30541113052331137
41.3897
ltrigg-rtg2INDELD6_15HG002complexvarhet
98.5457
97.9487
99.1499
50.4465
3056642916258
32.0000
ltrigg-rtg2SNPtimap_l250_m2_e1het
96.1485
92.6948
99.8695
77.1012
3058241306141
25.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.6598
95.2648
96.0580
63.2518
30581523046125116
92.8000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50het
98.1544
97.1410
99.1891
68.9245
3058903058258
32.0000
jli-customINDELD6_15HG002complexvarhet
98.7528
98.0128
99.5040
56.9844
30586230091510
66.6667
ltrigg-rtg1SNPtimap_l250_m2_e0het
96.8039
94.0074
99.7719
81.1683
3059195306272
28.5714
cchapple-customINDELD16_PLUS*het
96.8499
96.8344
96.8654
63.8824
30591005068164133
81.0976
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.3685
99.0609
93.8186
66.4004
305929256516932
18.9349
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.6316
99.0933
94.2892
74.2061
306028307118641
22.0430