PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72551-72600 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1238 | 96.5350 | 99.7657 | 66.1570 | 2981 | 107 | 2981 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4478 | 94.6950 | 92.2330 | 77.5820 | 2981 | 167 | 2945 | 248 | 101 | 40.7258 | |
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0037 | 98.8395 | 99.1683 | 69.7220 | 2981 | 35 | 2981 | 25 | 8 | 32.0000 | |
| anovak-vg | INDEL | D1_5 | * | hetalt | 0.0000 | 29.0971 | 0.0000 | 0.0000 | 2981 | 7264 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 60.4452 | 67.0715 | 55.0104 | 41.9298 | 2982 | 1464 | 4754 | 3888 | 3114 | 80.0926 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | * | 99.3016 | 99.2346 | 99.3688 | 80.4976 | 2982 | 23 | 2991 | 19 | 5 | 26.3158 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6909 | 95.5769 | 99.9005 | 44.3501 | 2982 | 138 | 3011 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_siren | * | 99.4006 | 99.2346 | 99.5672 | 79.0750 | 2982 | 23 | 2991 | 13 | 3 | 23.0769 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.2033 | 94.2180 | 92.2102 | 45.7942 | 2982 | 183 | 2983 | 252 | 219 | 86.9048 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 81.1322 | 81.9681 | 80.3133 | 62.9774 | 2982 | 656 | 2974 | 729 | 725 | 99.4513 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 82.8200 | 73.8119 | 94.3324 | 59.6824 | 2982 | 1058 | 5892 | 354 | 254 | 71.7514 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0536 | 98.9058 | 99.2019 | 69.0574 | 2983 | 33 | 2983 | 24 | 5 | 20.8333 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5824 | 99.4333 | 99.7320 | 76.7777 | 2983 | 17 | 2977 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2010 | 96.5997 | 95.8055 | 76.3827 | 2983 | 105 | 3015 | 132 | 4 | 3.0303 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.6410 | 0.0000 | 0.0000 | 2984 | 136 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 77.3354 | 79.2618 | 75.5004 | 55.1018 | 2985 | 781 | 2980 | 967 | 964 | 99.6898 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 77.3354 | 79.2618 | 75.5004 | 55.1018 | 2985 | 781 | 2980 | 967 | 964 | 99.6898 | |
| ckim-vqsr | SNP | * | map_l150_m2_e1 | homalt | 40.3024 | 25.2389 | 99.9665 | 90.9405 | 2985 | 8842 | 2985 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5993 | 99.5000 | 99.6988 | 76.7994 | 2985 | 15 | 2979 | 9 | 4 | 44.4444 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | het | 62.7486 | 57.4894 | 69.0669 | 93.5182 | 2986 | 2208 | 2983 | 1336 | 41 | 3.0689 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | * | 84.2732 | 79.4995 | 89.6568 | 87.9718 | 2986 | 770 | 3840 | 443 | 69 | 15.5756 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5829 | 99.5667 | 99.5991 | 76.3025 | 2987 | 13 | 2981 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5496 | 99.5667 | 99.5326 | 76.5043 | 2987 | 13 | 2981 | 14 | 4 | 28.5714 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5497 | 99.6000 | 99.4995 | 76.1480 | 2988 | 12 | 2982 | 15 | 4 | 26.6667 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6000 | 99.5327 | 76.7518 | 2988 | 12 | 2982 | 14 | 4 | 28.5714 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5329 | 99.6333 | 99.4326 | 76.3741 | 2989 | 11 | 2979 | 17 | 2 | 11.7647 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.1577 | 91.3256 | 99.3255 | 38.6854 | 2990 | 284 | 8246 | 56 | 45 | 80.3571 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8406 | 95.8333 | 99.9338 | 44.4975 | 2990 | 130 | 3019 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | * | map_l150_m0_e0 | homalt | 84.1702 | 73.1719 | 99.0595 | 77.5693 | 2992 | 1097 | 2949 | 28 | 25 | 89.2857 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2969 | 92.1490 | 96.5473 | 61.2007 | 2993 | 255 | 3020 | 108 | 27 | 25.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3525 | 99.2706 | 99.4347 | 70.0110 | 2994 | 22 | 2990 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5094 | 95.1398 | 100.0000 | 68.6617 | 2995 | 153 | 2995 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0580 | 99.3700 | 98.7479 | 70.2830 | 2997 | 19 | 2997 | 38 | 7 | 18.4211 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 78.4796 | 67.4314 | 93.8575 | 34.5759 | 2998 | 1448 | 8022 | 525 | 510 | 97.1429 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 69.1351 | 77.4877 | 62.4080 | 42.2541 | 2998 | 871 | 6702 | 4037 | 3716 | 92.0486 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5443 | 95.2668 | 99.9334 | 69.5454 | 2999 | 149 | 2999 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.1971 | 91.6616 | 76.1638 | 51.6125 | 3001 | 273 | 2994 | 937 | 932 | 99.4664 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5626 | 95.3621 | 99.8669 | 70.0866 | 3002 | 146 | 3002 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | het | 72.3037 | 95.0301 | 58.3494 | 71.4553 | 3002 | 157 | 3026 | 2160 | 1899 | 87.9167 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.3325 | 43.6538 | 97.6360 | 47.3850 | 3006 | 3880 | 3428 | 83 | 79 | 95.1807 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | het | 74.1407 | 59.0347 | 99.6358 | 83.5333 | 3009 | 2088 | 3009 | 11 | 1 | 9.0909 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | homalt | 87.5215 | 78.2371 | 99.3060 | 64.7976 | 3009 | 837 | 3005 | 21 | 17 | 80.9524 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | het | 72.5780 | 95.3150 | 58.5993 | 70.3918 | 3011 | 148 | 3029 | 2140 | 2055 | 96.0280 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | het | 97.1892 | 96.5064 | 97.8818 | 52.6751 | 3011 | 109 | 3974 | 86 | 77 | 89.5349 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | het | 83.6960 | 96.5705 | 73.8504 | 58.8480 | 3013 | 107 | 2923 | 1035 | 940 | 90.8213 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | het | 96.1263 | 92.6552 | 99.8676 | 76.8996 | 3015 | 239 | 3018 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | D6_15 | HG002complexvar | het | 94.9295 | 96.7628 | 93.1643 | 54.7892 | 3019 | 101 | 4116 | 302 | 103 | 34.1060 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1575 | 94.0810 | 96.2589 | 56.4633 | 3020 | 190 | 3242 | 126 | 118 | 93.6508 | |