PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72501-72550 / 86044 show all
gduggal-snapfbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
52.4956
98.0106
35.8482
76.1642
2956603022540861
1.1280
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1781
98.5667
99.7971
74.2130
295743295163
50.0000
ckim-dragenSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6894
98.0769
99.3097
69.5160
2958583021215
23.8095
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_diTR_11to50het
94.8865
95.8225
93.9686
74.8872
2959129292918879
42.0213
raldana-dualsentieonINDELI1_5map_siren*
98.8981
98.4692
99.3307
78.4555
2959462968203
15.0000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
76.3374
62.0495
99.1738
31.6467
2961181130012525
100.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.8035
95.8873
99.7978
64.0929
2961127296164
66.6667
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2623
98.7000
99.8311
74.5091
296139295551
20.0000
jmaeng-gatkINDELI1_5map_siren*
98.3096
98.5358
98.0845
83.5542
2961442970589
15.5172
ltrigg-rtg1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.0035
98.2095
95.8267
71.5438
29625430081314
3.0534
rpoplin-dv42INDELI1_5map_siren*
98.7675
98.5691
98.9667
80.4011
29624329693118
58.0645
ndellapenna-hhgaINDELI1_5map_siren*
98.9476
98.5691
99.3291
79.9192
2962432961206
30.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1793
98.7333
99.6293
74.5125
2962382956112
18.1818
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.5306
92.3053
98.9896
52.2438
296324729393030
100.0000
ltrigg-rtg1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2938
95.0000
99.7012
54.2527
2964156300398
88.8889
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.6406
75.4390
91.3622
46.4432
29649653226305294
96.3934
gduggal-bwafbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.3470
98.2759
88.8889
80.5601
296452296837122
5.9299
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.0919
98.8333
99.3518
73.8158
29653533722217
77.2727
jlack-gatkINDELI1_5map_siren*
97.8278
98.7022
96.9687
83.0880
29663929759310
10.7527
hfeng-pmm1INDELI1_5map_siren*
99.1319
98.7354
99.5316
79.6028
2967382975144
28.5714
anovak-vgINDELD1_5HG002compoundhethetalt
0.0000
29.0525
0.0000
0.0000
29687248000
mlin-fermikitSNPtilowcmp_SimpleRepeat_diTR_11to50het
96.2696
94.2821
98.3427
70.1080
29681802967502
4.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.7353
98.9667
98.5050
75.1773
29693129654533
73.3333
ckim-gatkINDELI1_5map_siren*
98.4771
98.8020
98.1543
83.2514
2969362978569
16.0714
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4894
95.1923
99.9000
43.6220
2970150299833
100.0000
hfeng-pmm2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5211
95.1923
99.9667
45.0549
2970150299911
100.0000
anovak-vgINDEL*map_sirenhet
71.2155
65.8829
77.4874
82.2828
297015383084896298
33.2589
ghariani-varprowlINDELD6_15HG002complexvarhet
84.7743
95.1923
76.4117
58.8552
29701502977919877
95.4298
jmaeng-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.9505
98.4748
99.4309
69.9164
2970462970174
23.5294
jli-customINDELI1_5map_siren*
99.2153
98.8353
99.5983
78.8156
2970352975124
33.3333
egarrison-hhgaINDELI1_5map_siren*
99.0333
98.8686
99.1987
80.5885
2971342971246
25.0000
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
ckim-vqsrSNP*map_l250_m1_e0*
57.9563
41.1520
97.9565
97.0469
297242502972620
0.0000
jli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5072
95.2564
99.8668
41.1211
2972148300044
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_diTR_11to50het
97.9888
96.2435
99.7985
65.0879
2972116297265
83.3333
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.3797
98.5411
94.3110
80.2460
297244298418015
8.3333
eyeh-varpipeSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
91.4663
98.5411
85.3394
78.6638
297244282948615
3.0864
ckim-vqsrSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.9186
98.5743
99.2654
69.9659
2973432973229
40.9091
jlack-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6565
98.6074
98.7056
69.5164
2974422974397
17.9487
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4480
99.1333
99.7647
74.0763
297426296873
42.8571
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50het
90.3835
96.3083
85.1454
76.8607
297411430155262
0.3802
hfeng-pmm2INDELI1_5map_siren*
99.2171
99.0017
99.4335
80.3741
2975302984174
23.5294
gduggal-bwaplatSNP*map_l250_m2_e1*
54.2324
37.2605
99.5985
97.3745
297650112977123
25.0000
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.8872
98.7069
99.0682
69.8958
2977392977289
32.1429
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.8587
98.7069
99.0109
72.0332
2977393003303
10.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_diTR_11to50het
97.2091
94.5997
99.9664
68.3186
2978170297810
0.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50het
98.0412
96.4378
99.6987
66.1107
2978110297897
77.7778
dgrover-gatkINDELI1_5map_siren*
99.2843
99.1348
99.4343
81.3909
2979262988175
29.4118
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2829
99.3333
99.2326
76.5804
2980202974238
34.7826