PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72451-72500 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5425 | 99.2565 | 99.8300 | 53.1529 | 2937 | 22 | 2937 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4582 | 99.2565 | 99.6607 | 48.9520 | 2937 | 22 | 2937 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.8896 | 99.2565 | 98.5255 | 64.2421 | 2937 | 22 | 2940 | 44 | 10 | 22.7273 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8525 | 95.1101 | 98.6600 | 66.4833 | 2937 | 151 | 2945 | 40 | 2 | 5.0000 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | hetalt | 85.9574 | 79.3998 | 93.6957 | 80.8679 | 2937 | 762 | 1293 | 87 | 84 | 96.5517 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.6795 | 97.9333 | 77.7454 | 76.6397 | 2938 | 62 | 2938 | 841 | 597 | 70.9869 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4249 | 99.3241 | 99.5259 | 48.4732 | 2939 | 20 | 2939 | 14 | 2 | 14.2857 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3913 | 99.3241 | 99.4585 | 49.1657 | 2939 | 20 | 2939 | 16 | 3 | 18.7500 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5900 | 99.3241 | 97.8667 | 64.6435 | 2939 | 20 | 2936 | 64 | 4 | 6.2500 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5396 | 99.3917 | 97.7019 | 59.4515 | 2941 | 18 | 2976 | 70 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 46.4146 | 34.9744 | 68.9769 | 73.6604 | 2941 | 5468 | 2926 | 1316 | 1208 | 91.7933 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5028 | 99.3917 | 79.7641 | 72.5419 | 2941 | 18 | 2976 | 755 | 16 | 2.1192 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.2516 | 95.2396 | 80.4999 | 81.9090 | 2941 | 147 | 2931 | 710 | 57 | 8.0282 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3078 | 99.3917 | 99.2240 | 48.4791 | 2941 | 18 | 2941 | 23 | 2 | 8.6957 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2882 | 97.5464 | 95.0621 | 69.7999 | 2942 | 74 | 2984 | 155 | 4 | 2.5807 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.5452 | 72.3383 | 88.3470 | 65.9371 | 2942 | 1125 | 3025 | 399 | 313 | 78.4461 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4759 | 99.4255 | 99.5264 | 47.7277 | 2942 | 17 | 2942 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.3156 | 74.9046 | 75.7313 | 50.0285 | 2943 | 986 | 3314 | 1062 | 550 | 51.7891 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 62.0279 | 93.0174 | 46.5270 | 38.0827 | 2944 | 221 | 2954 | 3395 | 3317 | 97.7025 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | het | 98.4913 | 99.1914 | 97.8011 | 90.9985 | 2944 | 24 | 2891 | 65 | 4 | 6.1539 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.8385 | 97.6127 | 96.0765 | 79.7850 | 2944 | 72 | 2963 | 121 | 4 | 3.3058 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5795 | 66.8939 | 95.2119 | 92.0071 | 2944 | 1457 | 2943 | 148 | 6 | 4.0541 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1851 | 98.1667 | 98.2036 | 71.4828 | 2945 | 55 | 2952 | 54 | 8 | 14.8148 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.7251 | 97.6459 | 81.2979 | 79.6603 | 2945 | 71 | 2969 | 683 | 7 | 1.0249 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5488 | 98.1667 | 89.3458 | 72.6223 | 2945 | 55 | 3346 | 399 | 43 | 10.7769 | |
| cchapple-custom | INDEL | I1_5 | map_siren | * | 98.3102 | 98.0033 | 98.6191 | 79.8398 | 2945 | 60 | 2928 | 41 | 14 | 34.1463 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2784 | 99.5607 | 95.0984 | 65.7462 | 2946 | 13 | 2949 | 152 | 10 | 6.5790 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0999 | 94.4231 | 99.9328 | 43.7027 | 2946 | 174 | 2975 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | HG002complexvar | * | 68.3061 | 61.4775 | 76.8413 | 54.9585 | 2946 | 1846 | 2963 | 893 | 875 | 97.9843 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5454 | 98.2333 | 98.8594 | 76.8466 | 2947 | 53 | 2947 | 34 | 5 | 14.7059 | |
| ckim-dragen | INDEL | I1_5 | map_siren | * | 98.1515 | 98.0699 | 98.2333 | 81.2007 | 2947 | 58 | 2947 | 53 | 13 | 24.5283 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4268 | 99.6283 | 99.2261 | 57.2682 | 2948 | 11 | 2949 | 23 | 1 | 4.3478 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6948 | 97.7785 | 99.6284 | 69.3550 | 2949 | 67 | 2949 | 11 | 6 | 54.5455 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5947 | 99.6620 | 99.5275 | 51.8290 | 2949 | 10 | 2949 | 14 | 1 | 7.1429 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6942 | 99.6620 | 93.8981 | 67.0587 | 2949 | 10 | 2893 | 188 | 6 | 3.1915 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9766 | 99.6958 | 96.3156 | 68.1284 | 2950 | 9 | 2954 | 113 | 5 | 4.4248 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1835 | 94.5513 | 99.9664 | 44.3822 | 2950 | 170 | 2979 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2004 | 94.5833 | 99.9665 | 44.9492 | 2951 | 169 | 2980 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7634 | 99.7296 | 99.7971 | 53.8905 | 2951 | 8 | 2951 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5783 | 99.7296 | 99.4274 | 58.3882 | 2951 | 8 | 2952 | 17 | 2 | 11.7647 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.2365 | 97.8780 | 98.5977 | 69.1078 | 2952 | 64 | 2953 | 42 | 11 | 26.1905 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | het | 92.2712 | 93.4473 | 91.1244 | 67.5886 | 2952 | 207 | 3193 | 311 | 263 | 84.5659 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0102 | 98.4000 | 99.6280 | 74.9024 | 2952 | 48 | 2946 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.5411 | 97.9111 | 97.1738 | 70.8692 | 2953 | 63 | 2957 | 86 | 7 | 8.1395 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3773 | 91.9938 | 99.0193 | 54.3250 | 2953 | 257 | 2928 | 29 | 29 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | * | 61.5481 | 44.5483 | 99.5283 | 92.9610 | 2954 | 3677 | 2954 | 14 | 5 | 35.7143 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6621 | 99.8310 | 99.4938 | 54.7565 | 2954 | 5 | 2948 | 15 | 1 | 6.6667 | |