PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72401-72450 / 86044 show all
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9979
73.8865
89.6241
43.4171
290310262885334316
94.6108
hfeng-pmm1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.9089
96.2533
99.6225
65.2640
29031132903110
0.0000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
90.5999
98.1413
84.1348
64.8517
290455292255127
4.9002
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
71.2738
92.2490
58.0701
68.6719
29042443015217768
3.1236
raldana-dualsentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.8272
96.2865
99.4180
65.5827
29041122904171
5.8824
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.8470
98.2089
99.4934
48.2524
2906532946154
26.6667
jmaeng-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.4342
93.1731
99.9319
40.7661
2907213293621
50.0000
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
70.4680
75.1615
66.3261
61.3642
2908961324616481139
69.1141
raldana-dualsentieonSNPtimap_l250_m1_e0het
97.3715
97.9784
96.7720
88.9838
2908602908972
2.0619
rpoplin-dv42SNPtimap_l250_m1_e0het
98.2113
98.0458
98.3773
88.2203
29105829104829
60.4167
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
83.0598
71.3760
99.3174
53.6319
2910116729102010
50.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.5935
97.6182
99.5885
50.6933
2910712904128
66.6667
ckim-vqsrINDELI1_5map_siren*
98.0317
96.9052
99.1848
83.6671
2912932920248
33.3333
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.5213
93.3654
99.8981
44.6324
2913207294233
100.0000
hfeng-pmm3SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.0815
96.6180
99.5899
68.7793
29141022914120
0.0000
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1590
93.4295
99.0528
42.4608
291520534513331
93.9394
jlack-gatkSNPtimap_l250_m1_e0het
91.8885
98.2817
86.2762
93.7627
291751291746439
8.4052
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.9297
97.2667
96.5950
72.0063
291882292210377
74.7573
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.1337
98.6144
99.6585
48.5413
2918412918102
20.0000
anovak-vgSNPtvlowcmp_SimpleRepeat_diTR_11to50het
92.5559
94.4948
90.6950
66.9104
29181703119320136
42.5000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3031
98.7158
99.8974
47.9345
292138292131
33.3333
dgrover-gatkSNPtimap_l250_m1_e0het
98.2014
98.4164
97.9873
91.3429
29214729216016
26.6667
gduggal-bwavardSNPtvHG002compoundhethomalt
92.4344
86.2456
99.5802
40.9644
29224662609118
72.7273
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.2199
97.4000
99.0537
71.5836
2922782931282
7.1429
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
49.6437
72.3762
37.7781
62.4735
29241116293848394790
98.9874
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7096
93.7179
99.8985
40.2466
2924196295333
100.0000
hfeng-pmm1SNPtimap_l250_m1_e0het
98.6671
98.5175
98.8172
88.8014
2924442924358
22.8571
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.2255
97.5000
96.9526
72.5894
29257529279263
68.4783
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7267
93.7500
99.8985
40.2385
2925195295433
100.0000
mlin-fermikitINDELD16_PLUS*het
88.5250
92.6242
84.7733
71.4486
29262332767497415
83.5010
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3551
98.9186
99.7954
49.2385
292732292760
0.0000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
88.4778
97.5667
80.9379
76.0931
2927732934691651
94.2113
gduggal-bwaplatSNP*map_l250_m2_e0*
54.0835
37.1211
99.5918
97.3661
292749582928123
25.0000
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
87.6253
90.1478
85.2402
88.4281
2928320292850725
4.9310
ltrigg-rtg1INDELI1_5map_siren*
98.3998
97.4709
99.3466
77.4486
2929762889193
15.7895
asubramanian-gatkSNP*map_l100_m0_e0homalt
40.2612
25.2065
99.9659
86.1052
29298691292910
0.0000
ndellapenna-hhgaSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.7649
97.1817
98.3552
68.9461
29318529304911
22.4490
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3054
99.0537
99.5584
45.3803
2931282931130
0.0000
ckim-vqsrSNP*map_l150_m2_e0homalt
40.0656
25.0534
99.9659
91.0042
29318768293111
100.0000
qzeng-customINDEL*map_l100_m2_e0*
84.2312
79.3934
89.6968
87.9330
2932761378743568
15.6322
anovak-vgSNPtilowcmp_SimpleRepeat_diTR_11to50het
89.0850
93.1385
85.3697
68.5884
29322163256558215
38.5305
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4235
99.0875
99.7618
50.0170
293227293270
0.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_diTR_11to50het
80.1599
93.1385
70.3560
81.4743
29322162905122464
5.2288
hfeng-pmm2SNPtimap_l250_m1_e0het
98.2909
98.8208
97.7667
90.5159
2933352933677
10.4478
hfeng-pmm3SNPtimap_l250_m1_e0het
98.8707
98.8208
98.9207
89.0542
2933352933323
9.3750
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3564
99.1213
99.5925
49.2504
2933262933123
25.0000
egarrison-hhgaINDELD6_15HG002complexvarhet
93.0974
94.0064
92.2058
56.4938
29331872993253209
82.6087
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.2421
99.1889
97.3132
58.3402
2935242970820
0.0000
egarrison-hhgaINDELD16_PLUS*het
92.0708
92.9408
91.2170
67.2524
29362233043293261
89.0785
bgallagher-sentieonSNPtimap_l250_m1_e0het
98.1612
98.9218
97.4121
90.4001
29363229367816
20.5128