PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72151-72200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4574 | 99.5649 | 99.3502 | 34.3868 | 2746 | 12 | 2599 | 17 | 7 | 41.1765 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | * | 94.8696 | 95.2811 | 94.4616 | 90.2325 | 2746 | 136 | 2746 | 161 | 55 | 34.1615 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7820 | 99.5649 | 100.0000 | 36.1989 | 2746 | 12 | 2746 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8002 | 99.6012 | 100.0000 | 36.4268 | 2747 | 11 | 2747 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2657 | 99.6737 | 96.8970 | 47.8485 | 2749 | 9 | 2748 | 88 | 17 | 19.3182 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | het | 83.5823 | 96.6936 | 73.6022 | 87.1311 | 2749 | 94 | 2738 | 982 | 41 | 4.1752 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | homalt | 99.7098 | 99.5654 | 99.8547 | 73.4497 | 2749 | 12 | 2749 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1641 | 99.7099 | 96.6655 | 41.7144 | 2750 | 8 | 2754 | 95 | 83 | 87.3684 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7451 | 99.7462 | 99.7441 | 40.9924 | 2751 | 7 | 2728 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | * | 97.5357 | 95.4545 | 99.7097 | 82.4960 | 2751 | 131 | 2748 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9025 | 98.1098 | 99.7081 | 39.8904 | 2751 | 53 | 2733 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8729 | 99.7825 | 99.9635 | 34.6365 | 2752 | 6 | 2741 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8911 | 99.7825 | 100.0000 | 36.2077 | 2752 | 6 | 2752 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.8370 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | homalt | 99.6019 | 99.6740 | 99.5298 | 75.8368 | 2752 | 9 | 2752 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.7331 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | * | 87.3512 | 77.9824 | 99.2785 | 89.5187 | 2752 | 777 | 2752 | 20 | 7 | 35.0000 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | het | 72.2025 | 57.8759 | 95.9554 | 96.7153 | 2752 | 2003 | 2752 | 116 | 9 | 7.7586 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0963 | 99.8550 | 96.3986 | 45.7203 | 2754 | 4 | 2757 | 103 | 70 | 67.9612 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8912 | 99.8550 | 99.9274 | 36.4538 | 2754 | 4 | 2754 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0622 | 99.8912 | 96.2989 | 47.9935 | 2755 | 3 | 2758 | 106 | 73 | 68.8679 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8184 | 99.8912 | 99.7456 | 35.4899 | 2755 | 3 | 2745 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | * | 84.9127 | 95.5933 | 76.3788 | 91.3348 | 2755 | 127 | 2742 | 848 | 31 | 3.6557 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9456 | 99.8912 | 100.0000 | 31.5724 | 2755 | 3 | 2746 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.8193 | 92.4187 | 97.3479 | 49.5090 | 2755 | 226 | 2753 | 75 | 52 | 69.3333 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9637 | 99.9275 | 100.0000 | 36.4245 | 2756 | 2 | 2756 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_siren | * | 90.0863 | 91.7138 | 88.5156 | 83.2677 | 2756 | 249 | 2898 | 376 | 184 | 48.9362 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 37.0751 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.0093 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.2312 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | homalt | 99.8168 | 99.8189 | 99.8146 | 77.6220 | 2756 | 5 | 2692 | 5 | 3 | 60.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.3783 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9456 | 99.9637 | 99.9275 | 37.1096 | 2757 | 1 | 2757 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9819 | 99.9637 | 100.0000 | 35.9582 | 2757 | 1 | 2757 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8009 | 99.9637 | 99.6386 | 38.4564 | 2757 | 1 | 2757 | 10 | 2 | 20.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9638 | 100.0000 | 99.9275 | 37.9915 | 2758 | 0 | 2758 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.6536 | 70.7724 | 91.0837 | 56.4003 | 2758 | 1139 | 1849 | 181 | 175 | 96.6851 | |
| cchapple-custom | SNP | tv | map_l250_m2_e0 | * | 95.6656 | 95.8015 | 95.5301 | 90.2861 | 2761 | 121 | 2757 | 129 | 24 | 18.6047 | |
| jli-custom | SNP | tv | map_l150_m0_e0 | het | 98.0858 | 97.3268 | 98.8567 | 76.0708 | 2767 | 76 | 2767 | 32 | 7 | 21.8750 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 50.6627 | 34.2063 | 97.6335 | 41.8233 | 2769 | 5326 | 3053 | 74 | 71 | 95.9459 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.8162 | 92.9554 | 98.8588 | 48.8601 | 2771 | 210 | 2772 | 32 | 27 | 84.3750 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | het | 54.9832 | 38.2239 | 97.9130 | 71.6136 | 2772 | 4480 | 2768 | 59 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.3645 | 86.4174 | 80.5198 | 60.1495 | 2774 | 436 | 3005 | 727 | 352 | 48.4182 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | * | 39.2587 | 24.4386 | 99.7483 | 94.9137 | 2775 | 8580 | 2774 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.2358 | 92.6000 | 80.6901 | 73.5018 | 2778 | 222 | 2783 | 666 | 652 | 97.8979 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 58.8151 | 45.7510 | 82.3221 | 66.0165 | 2778 | 3294 | 3772 | 810 | 398 | 49.1358 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | * | 73.1661 | 60.6683 | 92.1490 | 95.6157 | 2778 | 1801 | 2770 | 236 | 199 | 84.3220 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5831 | 88.2783 | 97.3293 | 62.2126 | 2779 | 369 | 2879 | 79 | 3 | 3.7975 | |