PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71951-72000 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | func_cds | het | 99.9248 | 100.0000 | 99.8497 | 29.2851 | 2657 | 0 | 2657 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2158 | 98.9203 | 99.5131 | 53.0673 | 2657 | 29 | 2657 | 13 | 2 | 15.3846 | |
| bgallagher-sentieon | SNP | tv | func_cds | het | 99.7184 | 100.0000 | 99.4384 | 31.4601 | 2657 | 0 | 2656 | 15 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 52.8485 | 46.3538 | 61.4597 | 79.2031 | 2657 | 3075 | 2762 | 1732 | 277 | 15.9931 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | het | 98.6061 | 97.7557 | 99.4715 | 72.8336 | 2657 | 61 | 2635 | 14 | 3 | 21.4286 | |
| hfeng-pmm2 | SNP | tv | func_cds | het | 99.8684 | 100.0000 | 99.7371 | 30.5787 | 2657 | 0 | 2656 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0353 | 98.9576 | 95.1862 | 61.9773 | 2658 | 28 | 2709 | 137 | 1 | 0.7299 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 78.8680 | 83.9810 | 74.3417 | 54.2249 | 2658 | 507 | 2654 | 916 | 914 | 99.7817 | |
| bgallagher-sentieon | SNP | * | map_l250_m2_e0 | homalt | 99.3276 | 98.9948 | 99.6627 | 86.1668 | 2659 | 27 | 2659 | 9 | 7 | 77.7778 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.4644 | 67.6763 | 80.3352 | 54.3953 | 2659 | 1270 | 2684 | 657 | 598 | 91.0198 | |
| cchapple-custom | INDEL | I16_PLUS | * | het | 98.4654 | 97.8293 | 99.1099 | 69.2948 | 2659 | 59 | 5122 | 46 | 28 | 60.8696 | |
| ckim-dragen | SNP | * | map_l250_m2_e0 | homalt | 99.1424 | 98.9948 | 99.2905 | 83.9458 | 2659 | 27 | 2659 | 19 | 16 | 84.2105 | |
| jli-custom | SNP | * | map_l250_m2_e0 | homalt | 99.3833 | 98.9948 | 99.7749 | 85.5202 | 2659 | 27 | 2659 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1612 | 99.0320 | 99.2908 | 52.9835 | 2660 | 26 | 2660 | 19 | 2 | 10.5263 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e1 | homalt | 98.7018 | 97.9029 | 99.5138 | 87.8305 | 2661 | 57 | 2661 | 13 | 13 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9955 | 99.0692 | 98.9219 | 52.5490 | 2661 | 25 | 2661 | 29 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | het | 98.4237 | 97.9029 | 98.9501 | 74.4344 | 2661 | 57 | 2639 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.6228 | 97.3655 | 37.0000 | 47.7504 | 2661 | 72 | 2664 | 4536 | 4487 | 98.9198 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2355 | 99.0692 | 99.4023 | 51.3626 | 2661 | 25 | 2661 | 16 | 1 | 6.2500 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4367 | 99.1065 | 92.0290 | 69.7242 | 2662 | 24 | 2667 | 231 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | het | 98.4241 | 97.9397 | 98.9135 | 73.5192 | 2662 | 56 | 2640 | 29 | 4 | 13.7931 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2546 | 99.1437 | 99.3657 | 50.4529 | 2663 | 23 | 2663 | 17 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 72.8639 | 81.3378 | 65.9890 | 43.5053 | 2663 | 611 | 5875 | 3028 | 2874 | 94.9141 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.4958 | 99.1809 | 99.8127 | 87.5461 | 2664 | 22 | 2664 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e0 | homalt | 99.4772 | 99.1809 | 99.7753 | 85.3224 | 2664 | 22 | 2664 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | homalt | 98.0657 | 96.4868 | 99.6971 | 76.4491 | 2664 | 97 | 2633 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.4597 | 44.8804 | 97.4636 | 72.8689 | 2665 | 3273 | 4957 | 129 | 121 | 93.7984 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9791 | 99.2182 | 98.7412 | 58.5355 | 2665 | 21 | 2667 | 34 | 4 | 11.7647 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9190 | 99.2554 | 96.6182 | 68.9966 | 2666 | 20 | 2657 | 93 | 4 | 4.3011 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | map_l250_m2_e1 | het | 67.0943 | 50.6649 | 99.2926 | 92.2258 | 2667 | 2597 | 2667 | 19 | 2 | 10.5263 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5366 | 99.3299 | 95.8069 | 62.8145 | 2668 | 18 | 2719 | 119 | 1 | 0.8403 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1212 | 96.7368 | 99.5458 | 35.0221 | 2668 | 90 | 2630 | 12 | 9 | 75.0000 | |
| astatham-gatk | INDEL | I16_PLUS | * | het | 98.4446 | 98.1604 | 98.7304 | 75.7581 | 2668 | 50 | 2644 | 34 | 11 | 32.3529 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.9606 | 75.6948 | 99.4477 | 36.9246 | 2669 | 857 | 2521 | 14 | 12 | 85.7143 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1374 | 97.6583 | 98.6213 | 37.9185 | 2669 | 64 | 8083 | 113 | 105 | 92.9204 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.2084 | 99.3671 | 65.8495 | 73.6859 | 2669 | 17 | 2713 | 1407 | 18 | 1.2793 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | * | het | 98.5008 | 98.2708 | 98.7318 | 75.5383 | 2671 | 47 | 2647 | 34 | 10 | 29.4118 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | * | 47.5699 | 33.4544 | 82.2913 | 80.2109 | 2672 | 5315 | 2672 | 575 | 501 | 87.1304 | |
| dgrover-gatk | INDEL | I16_PLUS | * | het | 98.6296 | 98.3076 | 98.9537 | 76.0151 | 2672 | 46 | 2648 | 28 | 9 | 32.1429 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2393 | 99.5160 | 98.9641 | 59.7528 | 2673 | 13 | 2675 | 28 | 4 | 14.2857 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | homalt | 99.6459 | 99.5160 | 99.7760 | 87.2925 | 2673 | 13 | 2673 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | * | het | 98.3735 | 98.3444 | 98.4027 | 76.2086 | 2673 | 45 | 2649 | 43 | 10 | 23.2558 | |
| ckim-dragen | INDEL | I16_PLUS | * | het | 98.7584 | 98.3444 | 99.1760 | 75.9243 | 2673 | 45 | 2648 | 22 | 6 | 27.2727 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9828 | 97.6625 | 98.3051 | 30.8535 | 2674 | 64 | 2668 | 46 | 33 | 71.7391 | |