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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71851-71900 / 86044 show all
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2822
99.3573
99.2072
83.9930
2628172628217
33.3333
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0767
99.3951
98.7603
83.0758
2629162629336
18.1818
jpowers-varprowlSNP*map_l250_m2_e1homalt
98.1703
96.7255
99.6588
90.0637
262989262995
55.5556
jlack-gatkINDEL*map_sirenhomalt
99.0590
99.0207
99.0974
80.4586
26292626352414
58.3333
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9101
98.0611
99.7739
42.7400
263052264866
100.0000
gduggal-snapplatSNPtvfunc_cdshet
99.1144
98.9838
99.2453
45.4845
2630272630200
0.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0211
98.0611
100.0000
42.7615
263052264900
rpoplin-dv42SNP*map_l250_m2_e0homalt
98.7237
97.9151
99.5458
87.7612
26305626301212
100.0000
rpoplin-dv42INDEL*map_sirenhomalt
99.1894
99.0584
99.3208
79.6138
26302526321811
61.1111
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
28.3070
0.0000
0.0000
26306661000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
28.3070
0.0000
0.0000
26306661000
jmaeng-gatkINDEL*map_sirenhomalt
99.1343
99.0960
99.1726
81.5411
26312426372215
68.1818
jpowers-varprowlSNPtvfunc_cdshet
98.3558
99.0591
97.6623
39.9644
2632252632630
0.0000
ckim-isaacINDELD16_PLUS*het
85.3103
83.3175
87.4007
59.5500
26325272310333202
60.6607
jlack-gatkINDELI16_PLUS*het
96.8584
96.8359
96.8808
75.4914
26328626098421
25.0000
gduggal-bwaplatSNPtvfunc_cdshet
99.3960
99.0967
99.6971
49.3090
263324263380
0.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4336
99.0594
99.8106
68.9594
263325263553
60.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.9667
98.0640
99.8862
50.8114
263452263430
0.0000
eyeh-varpipeSNPtvmap_l250_m1_e0*
98.7000
99.5089
97.9042
90.2532
2634132616566
10.7143
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
67.4740
66.1145
68.8906
60.7168
2634135027261231537
43.6231
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
53.4542
96.4142
36.9777
47.8842
263598265545254487
99.1602
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.5465
99.6219
99.4711
83.1776
2635102633148
57.1429
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.4573
73.9961
93.1034
68.3567
26359262673198164
82.8283
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.9522
65.2228
85.3794
65.4520
263514052914499370
74.1483
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4163
99.1347
99.6996
67.2044
263523265584
50.0000
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
81.6561
69.2510
99.4755
31.4587
2635117026551414
100.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7046
97.0188
92.4983
89.7173
263681276222460
26.7857
ckim-vqsrINDEL*map_sirenhomalt
99.3599
99.2844
99.4355
81.7137
2636192642158
53.3333
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.3594
99.1723
99.5472
71.1298
2636222638126
50.0000
ckim-gatkINDEL*map_sirenhomalt
99.3412
99.2844
99.3980
81.7081
2636192642169
56.2500
ciseli-customSNPtvfunc_cdshet
92.8964
99.2473
87.3095
32.0576
26372026353832
0.5222
raldana-dualsentieonINDEL*map_sirenhomalt
99.3604
99.3597
99.3611
79.7735
26381726441711
64.7059
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9837
67.6931
89.2302
57.8962
263812592643319317
99.3730
gduggal-bwafbSNP*map_l250_m2_e0homalt
99.0054
98.2130
99.8108
88.9664
263848263855
100.0000
gduggal-bwavardSNP*map_l250_m2_e1homalt
98.2472
97.0935
99.4288
88.0788
26397926111510
66.6667
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
78.9545
65.5001
99.3652
25.9198
2639139026611717
100.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
47.1342
38.1966
61.5321
37.8247
26394270521332592660
81.6201
dgrover-gatkINDEL*map_sirenhomalt
99.3423
99.4350
99.2498
81.7385
26401526462011
55.0000
raldana-dualsentieonINDELI16_PLUS*het
98.2484
97.1302
99.3926
71.9668
2640782618168
50.0000
jli-customINDEL*map_sirenhomalt
99.3607
99.4350
99.2865
79.8135
26401526441911
57.8947
hfeng-pmm2INDEL*map_sirenhomalt
99.3610
99.4350
99.2871
79.4763
26401526461912
63.1579
hfeng-pmm3INDEL*map_sirenhomalt
99.4733
99.4727
99.4739
78.7290
2641142647149
64.2857
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6041
99.3604
99.8489
69.0699
264117264342
50.0000
hfeng-pmm1INDEL*map_sirenhomalt
99.4357
99.4727
99.3987
79.2482
2641142645169
56.2500
ckim-dragenINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5100
99.3604
99.6600
70.5987
264117263892
22.2222
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.2000
97.2028
99.2178
83.0336
2641762537201
5.0000
dgrover-gatkSNP*map_l250_m2_e0homalt
99.0440
98.3619
99.7357
86.6145
264244264275
71.4286
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5855
99.3980
99.7736
69.6866
264216264464
66.6667
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6042
99.3980
99.8112
69.7820
264216264353
60.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.8829
98.3619
99.4094
51.8057
2642442693163
18.7500