PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71801-71850 / 86044 show all
ltrigg-rtg2INDEL*map_sirenhomalt
98.9758
98.3427
99.6172
74.6678
2611442602107
70.0000
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
84.2619
97.2450
74.3373
66.4617
261274263691012
1.3187
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0022
98.7524
97.2633
81.0644
2612332630742
2.7027
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
90.0673
98.7902
82.7599
87.1462
261332228547624
5.0420
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
84.5297
95.6092
75.7515
51.0570
26131202999960935
97.3958
cchapple-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.9760
98.3446
99.6155
65.8661
2614442591108
80.0000
jli-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.0528
98.3446
99.7713
68.4849
261444261764
66.6667
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0783
98.8658
97.3033
81.4881
2615302634731
1.3699
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.1094
98.3822
99.8474
70.7576
261543261743
75.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
86.8145
81.4642
92.9171
53.5981
26155952768211211
100.0000
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
84.9850
73.9327
99.9224
57.1120
2615922257622
100.0000
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.9992
97.3939
92.7195
74.6356
261670259820419
9.3137
ndellapenna-hhgaINDEL*map_sirenhomalt
98.6802
98.5687
98.7920
79.0989
26173826173223
71.8750
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.0355
98.4951
99.5819
70.6787
2618402620113
27.2727
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7925
97.6137
100.0000
42.2217
261864263700
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7925
97.6137
100.0000
42.7983
261864263700
cchapple-customSNP*map_l250_m2_e1homalt
98.1075
96.3208
99.9618
85.0801
2618100261711
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.0730
98.4951
99.6577
70.6945
261840262093
33.3333
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.4586
99.0170
97.9065
84.2545
26192626195614
25.0000
mlin-fermikitSNP*map_l250_m2_e0*
47.3085
33.2150
82.1776
79.9585
261952662619568495
87.1479
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7006
97.6510
99.7730
41.9121
261963263766
100.0000
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.2099
98.5704
99.8579
70.2128
262038281044
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2612
99.0548
99.4685
84.3994
2620252620146
42.8571
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.9427
98.5704
99.3179
69.3175
26203826211814
77.7778
egarrison-hhgaINDEL*map_sirenhomalt
98.7934
98.6817
98.9052
79.7136
26203526202920
68.9655
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2430
99.1304
99.3558
84.2935
2622232622177
41.1765
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
80.7906
68.5669
98.3181
40.6653
2622120228064841
85.4167
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7395
97.7629
99.7358
42.4788
262260264377
100.0000
mlin-fermikitSNPtvfunc_cdshet
99.1679
98.6827
99.6579
21.9982
262235262290
0.0000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3959
99.1682
99.6246
82.9296
2623222654106
60.0000
ckim-isaacSNPtvfunc_cdshet
99.3184
98.7204
99.9238
24.8927
262334262320
0.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6230
96.5771
98.6919
84.5324
26249327163623
63.8889
astatham-gatkSNP*map_l250_m2_e0homalt
98.6837
97.6917
99.6960
86.3485
262462262487
87.5000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.7237
93.5806
91.8824
43.4731
26241802626232212
91.3793
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
91.0906
96.0483
86.6196
46.4616
262510874771155540
46.7532
jlack-gatkSNP*map_l250_m2_e0homalt
98.6471
97.7290
99.5827
86.9731
2625612625118
72.7273
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2626
99.2439
99.2814
84.2685
2625202625197
36.8421
gduggal-bwavardSNPtvfunc_cdshet
99.0001
98.7956
99.2054
42.2421
2625322622219
42.8571
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0766
96.6507
99.5451
88.1460
26269126261211
91.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2817
99.2817
99.2817
83.4450
2626192626196
31.5789
ghariani-varprowlSNP*map_l250_m2_e1homalt
98.1315
96.6152
99.6963
88.8565
262692262684
50.0000
gduggal-snapvardSNPtvfunc_cdshet
98.7765
98.8333
98.7199
41.1608
2626312622349
26.4706
ckim-isaacINDEL*map_l100_m2_e1*
81.7169
69.9148
98.3127
84.3697
2626113026224521
46.6667
ltrigg-rtg1INDEL*map_sirenhomalt
99.1870
98.9077
99.4679
78.0366
26262926171410
71.4286
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.2639
98.7961
99.7361
66.9655
262632264674
57.1429
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
ckim-dragenINDEL*map_sirenhomalt
98.9825
98.9454
99.0196
81.6305
26272826262615
57.6923
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.6423
87.1021
73.3594
90.7618
2627389262795423
2.4109
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8721
97.9866
99.7738
42.6347
262854264666
100.0000
cchapple-customSNPtimap_l150_m0_e0homalt
97.5139
95.1829
99.9619
70.3118
2628133262711
100.0000