PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71701-71750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 77.7807 | 65.3066 | 96.1451 | 67.6686 | 2545 | 1352 | 2544 | 102 | 31 | 30.3922 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9595 | 94.7878 | 95.1319 | 62.5104 | 2546 | 140 | 2560 | 131 | 60 | 45.8015 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3074 | 94.9664 | 99.7667 | 39.5535 | 2547 | 135 | 2566 | 6 | 6 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8086 | 94.8250 | 98.8768 | 51.0057 | 2547 | 139 | 2553 | 29 | 2 | 6.8966 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.3777 | 93.7799 | 97.0308 | 84.5325 | 2548 | 169 | 2549 | 78 | 41 | 52.5641 | |
| anovak-vg | SNP | ti | map_l250_m1_e0 | het | 71.0849 | 85.8491 | 60.6538 | 92.0278 | 2548 | 420 | 2542 | 1649 | 363 | 22.0133 | |
| asubramanian-gatk | INDEL | I16_PLUS | * | het | 96.3656 | 93.7454 | 99.1366 | 77.2113 | 2548 | 170 | 2526 | 22 | 11 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 58.2603 | 63.0693 | 54.1327 | 69.0970 | 2548 | 1492 | 2790 | 2364 | 1096 | 46.3621 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5222 | 92.4891 | 94.5785 | 50.7408 | 2549 | 207 | 2547 | 146 | 141 | 96.5753 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.4948 | 41.7896 | 34.0005 | 84.4865 | 2550 | 3552 | 2650 | 5144 | 58 | 1.1275 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.3420 | 79.4704 | 92.1504 | 48.6116 | 2551 | 659 | 2524 | 215 | 182 | 84.6512 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | het | 94.8292 | 93.8926 | 95.7847 | 65.3540 | 2552 | 166 | 2545 | 112 | 105 | 93.7500 | |
| eyeh-varpipe | INDEL | * | map_siren | homalt | 94.7726 | 96.1959 | 93.3908 | 81.3483 | 2554 | 101 | 2925 | 207 | 162 | 78.2609 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | * | 66.8585 | 50.3546 | 99.4553 | 90.8557 | 2556 | 2520 | 2556 | 14 | 3 | 21.4286 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | het | 87.0129 | 80.9433 | 94.0664 | 49.5246 | 2557 | 602 | 3995 | 252 | 244 | 96.8254 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | homalt | 95.8935 | 92.6114 | 99.4168 | 85.4187 | 2557 | 204 | 2557 | 15 | 7 | 46.6667 | |
| gduggal-snapplat | INDEL | I6_15 | * | het | 35.6936 | 25.4959 | 59.4871 | 60.4118 | 2558 | 7475 | 2505 | 1706 | 46 | 2.6964 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | * | 80.6558 | 68.1044 | 98.8790 | 92.5655 | 2558 | 1198 | 2558 | 29 | 11 | 37.9310 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6889 | 92.8520 | 96.5999 | 48.0063 | 2559 | 197 | 2557 | 90 | 87 | 96.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | * | het | 94.4206 | 94.1869 | 94.6554 | 70.0188 | 2560 | 158 | 2568 | 145 | 95 | 65.5172 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7243 | 96.3506 | 97.1009 | 69.6907 | 2561 | 97 | 2579 | 77 | 32 | 41.5584 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.2763 | 96.9365 | 99.6537 | 46.3792 | 2563 | 81 | 2590 | 9 | 8 | 88.8889 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2861 | 96.5348 | 98.0492 | 68.8578 | 2563 | 92 | 2513 | 50 | 38 | 76.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 57.1106 | 50.0879 | 66.4235 | 43.0727 | 2563 | 2554 | 2732 | 1381 | 1057 | 76.5387 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8068 | 96.9376 | 98.6918 | 81.5857 | 2564 | 81 | 2565 | 34 | 13 | 38.2353 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2111 | 96.5725 | 97.8583 | 68.9818 | 2564 | 91 | 2513 | 55 | 49 | 89.0909 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.3063 | 96.6102 | 98.0125 | 68.8327 | 2565 | 90 | 2515 | 51 | 39 | 76.4706 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | * | 97.3075 | 96.9399 | 97.6780 | 89.1719 | 2566 | 81 | 2566 | 61 | 14 | 22.9508 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.6812 | 70.0218 | 89.7846 | 52.4533 | 2567 | 1099 | 2584 | 294 | 213 | 72.4490 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2141 | 96.6855 | 97.7484 | 68.9339 | 2567 | 88 | 2518 | 58 | 46 | 79.3103 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.1364 | 94.5160 | 21.5792 | 83.2603 | 2568 | 149 | 2670 | 9703 | 190 | 1.9582 | |
| jli-custom | SNP | tv | map_l250_m1_e0 | * | 97.9966 | 97.0155 | 98.9977 | 85.0101 | 2568 | 79 | 2568 | 26 | 11 | 42.3077 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6327 | 95.7867 | 99.5512 | 56.7594 | 2569 | 113 | 2662 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.8863 | 96.6892 | 99.1133 | 68.8334 | 2570 | 88 | 2571 | 23 | 22 | 95.6522 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8010 | 94.0359 | 97.6336 | 60.3151 | 2570 | 163 | 2558 | 62 | 59 | 95.1613 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.4617 | 73.6541 | 96.2825 | 47.7670 | 2572 | 920 | 2590 | 100 | 75 | 75.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.8750 | 93.9737 | 99.9612 | 23.5381 | 2573 | 165 | 2575 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 46.2642 | 97.2779 | 30.3489 | 80.4847 | 2573 | 72 | 2627 | 6029 | 58 | 0.9620 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | * | 94.3742 | 97.2799 | 91.6370 | 91.1799 | 2575 | 72 | 2575 | 235 | 32 | 13.6170 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.4823 | 96.9868 | 97.9829 | 69.3497 | 2575 | 80 | 2526 | 52 | 40 | 76.9231 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.2210 | 94.2188 | 96.2448 | 59.6025 | 2575 | 158 | 2563 | 100 | 97 | 97.0000 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | * | 97.1159 | 97.3177 | 96.9150 | 89.2026 | 2576 | 71 | 2576 | 82 | 11 | 13.4146 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8650 | 94.2920 | 97.4914 | 60.1243 | 2577 | 156 | 2565 | 66 | 61 | 92.4242 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.1048 | 71.1289 | 75.1936 | 73.0650 | 2577 | 1046 | 2622 | 865 | 237 | 27.3988 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | * | 91.7764 | 97.3933 | 86.7721 | 92.6439 | 2578 | 69 | 2578 | 393 | 24 | 6.1069 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | * | 98.4351 | 97.4311 | 99.4601 | 86.8596 | 2579 | 68 | 2579 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | * | 97.8376 | 97.4311 | 98.2476 | 86.7964 | 2579 | 68 | 2579 | 46 | 30 | 65.2174 | |