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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71651-71700 / 86044 show all
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4691
99.4104
99.5279
48.5945
2529152530121
8.3333
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.9212
95.2542
98.6476
65.8841
252912624803424
70.5882
hfeng-pmm2INDEL*segdup*
99.0994
98.9828
99.2163
94.4475
2530262532204
20.0000
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.7744
95.3296
98.2636
65.4439
253112424904433
75.0000
hfeng-pmm3INDEL*segdup*
99.3329
99.0219
99.6459
93.8860
253125253393
33.3333
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5478
99.4890
99.6066
49.0683
2531132532102
20.0000
ckim-gatkINDEL*segdup*
97.7045
99.0219
96.4218
95.7792
25312525339410
10.6383
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.1008
91.8360
94.4009
50.5628
25312252529150146
97.3333
cchapple-customSNPtvmap_l250_m1_e0*
95.5601
95.6177
95.5026
89.6633
2531116252711924
20.1681
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
81.3153
78.8474
83.9428
62.4516
25316792525483481
99.5859
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
95.2032
91.8723
98.7848
43.0326
253222425203130
96.7742
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4893
99.5283
99.4503
51.6973
2532122533141
7.1429
qzeng-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
79.1080
66.2395
98.1818
59.6577
2533129116232
66.6667
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.8699
99.5676
98.1818
59.8602
2533112538472
4.2553
gduggal-snapvardSNPtvmap_l250_m1_e0*
84.2656
95.6932
75.2762
90.8080
2533114252182830
3.6232
bgallagher-sentieonINDEL*segdup*
98.9462
99.1393
98.7539
94.5996
25342225363211
34.3750
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
88.1401
80.0632
98.0294
59.0247
253463125375148
94.1176
jlack-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.1564
95.4426
96.8811
68.1564
253412124858069
86.2500
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
dgrover-gatkINDEL*segdup*
99.0625
99.1784
98.9470
94.7737
25352125372710
37.0370
ckim-dragenINDEL*segdup*
97.1040
99.1784
95.1146
95.2650
253521253113014
10.7692
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.9220
99.6855
98.1700
51.8185
253682575480
0.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.4672
95.4477
99.5740
49.7805
253712131556135135
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.5329
95.5556
97.5304
68.9206
253711824886354
85.7143
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5489
99.7642
99.3346
49.7344
253862538170
0.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7054
99.7642
99.6466
52.8246
25386253891
11.1111
mlin-fermikitSNPtvmap_l125_m0_e0*
51.6639
38.2748
79.4606
60.5371
253840932534655574
87.6336
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.1269
99.7642
96.5426
62.1131
2538625419111
12.0879
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.1521
99.7642
92.7925
63.8373
25386245919110
5.2356
egarrison-hhgaINDELI16_PLUS*het
94.6145
93.4143
95.8459
68.1424
2539179253811063
57.2727
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
52.6335
254042540142
14.2857
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
51.5542
254042540161
6.2500
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1721
99.8428
98.5103
52.2176
254042579390
0.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4518
99.8428
99.0640
53.5675
254042540240
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
50.2823
254042540140
0.0000
gduggal-bwaplatSNP*map_l250_m1_e0*
51.9747
35.1703
99.5300
97.3642
254046822541123
25.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8239
99.8428
99.8051
49.9512
25404256050
0.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
52.6140
254042540162
12.5000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6468
99.8821
99.4127
54.4823
254132539151
6.6667
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.1896
94.7427
99.7662
39.0209
2541141256066
100.0000
gduggal-bwaplatSNP*map_l125_m0_e0homalt
54.9108
37.8576
99.9213
85.2772
25414171253922
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.2092
94.7800
99.7663
39.0116
2542140256166
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8821
99.9214
99.8429
48.2941
25422254240
0.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
54.7020
0.0000
0.0000
25422105000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.1357
96.1059
70.2007
87.2590
2542103258910994
0.3640
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.8875
93.5591
79.3786
89.7033
25421752606677208
30.7238
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.8939
95.6734
98.1460
66.3548
254311525414816
33.3333
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.3705
92.2714
94.4961
50.6515
25432132541148144
97.2973
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
58.5321
47.8735
75.2959
43.8204
25442770871428592841
99.3704
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.1757
96.1815
94.1907
88.8007
254410125781596
3.7736