PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71601-71650 / 86044 show all
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.2273
94.7806
99.8035
33.5162
2506138254055
100.0000
gduggal-snapfbSNP*map_l250_m2_e1homalt
95.5941
92.2001
99.2475
92.8509
250621225061910
52.6316
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.1443
94.3879
97.9673
65.1092
250614924585144
86.2745
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.3850
94.7826
88.2225
88.3133
2507138244232684
25.7669
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1163
94.8582
99.4845
82.0575
25091362509136
46.1538
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.5485
98.6635
98.4338
60.5864
2510342514400
0.0000
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.2324
94.9716
99.6035
82.0153
25121332512103
30.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.3676
91.1466
93.6218
50.4528
25122442510171166
97.0760
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
62.9939
46.2118
98.9156
35.8827
2513292520982320
86.9565
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.6238
94.6516
98.6800
66.1797
251314224673325
75.7576
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.4582
91.2192
93.7313
49.9720
25142422512168168
100.0000
gduggal-bwaplatINDEL*map_l100_m2_e0*
80.6607
68.1018
98.8989
92.5303
2515117825152811
39.2857
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.3833
94.7646
98.0583
61.6187
251613925255025
50.0000
ckim-isaacINDELD6_15HG002complexvarhet
83.3579
80.6410
86.2642
49.0301
25166041972314100
31.8471
gduggal-snapfbSNPtvmap_l250_m1_e0*
94.8003
95.0510
94.5509
89.8505
2516131251614553
36.5517
jlack-gatkINDEL*segdup*
95.2733
98.4742
92.2739
95.5954
251739252021115
7.1090
asubramanian-gatkSNPtvmap_l150_m1_e0*
37.4814
23.0755
99.7622
94.8394
25188394251761
16.6667
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.4338
76.9090
68.4508
62.7083
251875627881285845
65.7588
ltrigg-rtg1SNPtvmap_l250_m1_e0*
97.3892
95.1266
99.7620
81.0778
2518129251563
50.0000
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
80.5645
99.0173
67.9091
64.2303
2519252569121425
2.0593
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
72.7782
64.6063
83.3167
68.8822
251913802512503427
84.8907
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
81.6123
69.5280
98.7810
81.8253
2519110425123113
41.9355
gduggal-snapfbINDEL*map_sirenhomalt
96.2019
94.8776
97.5638
84.0656
251913625236332
50.7937
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4277
99.0173
99.8415
46.1817
251925251940
0.0000
ckim-isaacSNPtimap_l250_m2_e0*
66.8081
50.2995
99.4473
90.8038
251924892519143
21.4286
rpoplin-dv42INDEL*segdup*
98.8630
98.5915
99.1359
99.1675
25203625242221
95.4545
gduggal-snapvardSNP*map_l250_m2_e0homalt
96.5678
93.8198
99.4817
88.0057
25201662495139
69.2308
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_51to200*
96.8189
94.9153
98.8005
65.6974
252013524713022
73.3333
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3889
99.0959
99.6837
47.2135
252123252180
0.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4872
99.1352
99.8416
45.8405
252222252240
0.0000
asubramanian-gatkINDEL*map_sirenhomalt
97.0575
94.9906
99.2163
82.1825
25221332532209
45.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5463
99.1745
99.9208
47.8198
252321252320
0.0000
gduggal-bwaplatINDEL*HG002complexvarhetalt
79.9153
68.2076
96.4751
78.0617
2523117625189288
95.6522
ckim-vqsrINDEL*segdup*
98.6516
98.7089
98.5943
95.8809
25233325253610
27.7778
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
95.3387
95.0659
95.6131
74.9211
2524131265912256
45.9016
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
95.0924
99.2138
91.2996
66.9963
25242025292410
0.0000
raldana-dualsentieonINDEL*segdup*
99.0001
98.7480
99.2534
93.8102
25243225261911
57.8947
ltrigg-rtg2INDEL*segdup*
98.9993
98.7872
99.2123
93.0351
2525312519205
25.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
68.4840
92.9334
54.2196
86.0939
252519226022197203
9.2399
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.6238
92.9702
96.3373
84.5241
252619125259661
63.5417
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6057
99.2925
99.9209
50.5187
252618252620
0.0000
astatham-gatkSNPtvmap_l250_m2_e1*
92.4090
86.6255
99.0200
90.7000
25263902526257
28.0000
astatham-gatkINDEL*segdup*
98.7115
98.8654
98.5581
94.6872
25272925293710
27.0270
gduggal-snapplatSNPtimap_l250_m1_e0het
88.1746
85.1415
91.4317
94.5451
25274412529237123
51.8987
jmaeng-gatkINDEL*segdup*
96.3424
98.8654
93.9450
95.7742
252729252916311
6.7485
cchapple-customINDEL*segdup*
99.1318
98.9045
99.3602
94.4519
25282826401710
58.8235
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.1129
91.7634
94.5026
50.6095
25292272527147143
97.2789
jli-customINDEL*segdup*
99.1762
98.9437
99.4099
94.0244
2529272527157
46.6667
hfeng-pmm1INDEL*segdup*
99.0215
98.9437
99.0995
94.0294
2529272531234
17.3913
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.9531
94.2953
99.7651
38.9579
2529153254866
100.0000