PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71501-71550 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3066 | 98.7971 | 97.8209 | 68.6304 | 2464 | 30 | 2469 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.8486 | 89.4412 | 98.7128 | 45.6849 | 2465 | 291 | 2454 | 32 | 30 | 93.7500 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.3468 | 98.8372 | 60.8781 | 62.7229 | 2465 | 29 | 2482 | 1595 | 17 | 1.0658 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6765 | 99.4754 | 99.8784 | 28.4513 | 2465 | 13 | 2464 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3754 | 98.8773 | 99.8785 | 57.1429 | 2466 | 28 | 2466 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7776 | 99.5561 | 100.0000 | 29.2802 | 2467 | 11 | 2466 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2283 | 99.5561 | 91.2611 | 45.6295 | 2467 | 11 | 2475 | 237 | 8 | 3.3755 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.5385 | 93.3434 | 99.9601 | 37.5156 | 2468 | 176 | 2504 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6572 | 99.5964 | 99.7181 | 27.1206 | 2468 | 10 | 2476 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6975 | 99.6368 | 99.7584 | 27.0564 | 2469 | 9 | 2477 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.5779 | 97.0912 | 81.4371 | 71.0683 | 2470 | 74 | 2448 | 558 | 8 | 1.4337 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4965 | 99.7175 | 99.2765 | 38.0786 | 2471 | 7 | 2470 | 18 | 1 | 5.5556 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.9639 | 78.4943 | 97.4823 | 82.5580 | 2471 | 677 | 2478 | 64 | 33 | 51.5625 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6976 | 99.7579 | 99.6374 | 34.5809 | 2472 | 6 | 2473 | 9 | 3 | 33.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5570 | 99.1179 | 100.0000 | 57.0236 | 2472 | 22 | 2472 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 56.0755 | 41.6302 | 85.8726 | 84.0433 | 2472 | 3466 | 2480 | 408 | 341 | 83.5784 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4571 | 99.1580 | 99.7580 | 57.7755 | 2473 | 21 | 2473 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 58.8295 | 52.0303 | 67.6729 | 41.0135 | 2473 | 2280 | 2623 | 1253 | 974 | 77.7334 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5772 | 99.1580 | 100.0000 | 57.3253 | 2473 | 21 | 2473 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2145 | 93.1450 | 95.3088 | 77.7623 | 2473 | 182 | 2438 | 120 | 91 | 75.8333 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4171 | 99.1580 | 99.6775 | 58.2394 | 2473 | 21 | 2473 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3529 | 89.7315 | 95.1320 | 41.7997 | 2473 | 283 | 2775 | 142 | 134 | 94.3662 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8184 | 99.8386 | 99.7982 | 36.6402 | 2474 | 4 | 2473 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | * | 96.5840 | 93.4643 | 99.9191 | 77.8524 | 2474 | 173 | 2471 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | * | het | 66.4433 | 91.0228 | 52.3161 | 67.5288 | 2474 | 244 | 2496 | 2275 | 1694 | 74.4615 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8385 | 99.8386 | 99.8385 | 31.8944 | 2474 | 4 | 2473 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7872 | 99.8789 | 97.7191 | 41.8567 | 2475 | 3 | 2442 | 57 | 4 | 7.0175 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 75.3471 | 93.5728 | 63.0638 | 89.0931 | 2475 | 170 | 2433 | 1425 | 52 | 3.6491 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6036 | 99.2382 | 90.3825 | 74.1987 | 2475 | 19 | 2481 | 264 | 1 | 0.3788 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.8789 | 99.7181 | 29.8389 | 2475 | 3 | 2476 | 7 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8991 | 99.8789 | 99.9192 | 29.1154 | 2475 | 3 | 2474 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.1927 | 97.3270 | 72.6431 | 60.4890 | 2476 | 68 | 2512 | 946 | 9 | 0.9514 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.9193 | 99.6778 | 30.7392 | 2476 | 2 | 2475 | 8 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6831 | 93.6838 | 99.8808 | 36.3590 | 2477 | 167 | 2514 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8389 | 99.9596 | 99.7185 | 33.2528 | 2477 | 1 | 2480 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | homalt | 95.6387 | 92.2561 | 99.2788 | 92.8119 | 2478 | 208 | 2478 | 18 | 10 | 55.5556 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 88.2413 | 79.4231 | 99.2621 | 38.3627 | 2478 | 642 | 3094 | 23 | 17 | 73.9130 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5782 | 99.3986 | 99.7586 | 57.7309 | 2479 | 15 | 2479 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | INDEL | * | HG002compoundhet | het | 71.1390 | 60.5520 | 86.2126 | 38.8614 | 2479 | 1615 | 23405 | 3743 | 1778 | 47.5020 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | homalt | 34.6568 | 20.9605 | 100.0000 | 92.1810 | 2479 | 9348 | 2479 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6384 | 99.4387 | 99.8390 | 60.5902 | 2480 | 14 | 2480 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.0146 | 63.6573 | 82.8979 | 66.4923 | 2482 | 1417 | 2443 | 504 | 406 | 80.5556 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | * | 75.3445 | 66.1342 | 87.5352 | 80.6829 | 2484 | 1272 | 2486 | 354 | 273 | 77.1186 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7263 | 54.2477 | 97.5648 | 96.1076 | 2484 | 2095 | 2484 | 62 | 7 | 11.2903 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.6549 | 93.5593 | 97.8465 | 65.3460 | 2484 | 171 | 2499 | 55 | 26 | 47.2727 | |