PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71451-71500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | map_siren | homalt | 95.6313 | 91.9397 | 99.6318 | 70.4973 | 2441 | 214 | 2435 | 9 | 6 | 66.6667 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2683 | 98.5472 | 100.0000 | 30.9086 | 2442 | 36 | 2441 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.7166 | 95.9906 | 95.4442 | 52.1613 | 2442 | 102 | 2514 | 120 | 52 | 43.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | homalt | 99.4502 | 99.1474 | 99.7549 | 84.1101 | 2442 | 21 | 2442 | 6 | 3 | 50.0000 | |
| egarrison-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.4705 | 99.1474 | 99.7957 | 86.3912 | 2442 | 21 | 2442 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.3952 | 89.8785 | 99.3897 | 87.2026 | 2442 | 275 | 2443 | 15 | 3 | 20.0000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | het | 71.3076 | 55.5101 | 99.6736 | 79.7505 | 2443 | 1958 | 2443 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5922 | 88.6792 | 96.8663 | 47.5010 | 2444 | 312 | 2442 | 79 | 77 | 97.4684 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0710 | 92.4735 | 99.9597 | 37.1168 | 2445 | 199 | 2481 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 79.3964 | 87.2325 | 72.8520 | 53.8546 | 2446 | 358 | 2442 | 910 | 909 | 99.8901 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 80.0060 | 66.7485 | 99.8350 | 38.5707 | 2447 | 1219 | 2420 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9886 | 98.1155 | 99.8774 | 55.5677 | 2447 | 47 | 2443 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2697 | 98.7490 | 99.7960 | 33.5412 | 2447 | 31 | 2446 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1118 | 92.5492 | 99.9597 | 37.5723 | 2447 | 197 | 2483 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.5883 | 90.0626 | 99.5930 | 87.0976 | 2447 | 270 | 2447 | 10 | 4 | 40.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 81.7820 | 89.5719 | 75.2387 | 54.8652 | 2448 | 285 | 2443 | 804 | 793 | 98.6318 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0950 | 92.5870 | 99.8794 | 36.4264 | 2448 | 196 | 2484 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7289 | 88.8607 | 96.9493 | 47.5369 | 2449 | 307 | 2447 | 77 | 75 | 97.4026 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1706 | 98.8297 | 99.5138 | 43.4464 | 2449 | 29 | 2456 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | homalt | 99.6541 | 99.4316 | 99.8777 | 84.3152 | 2449 | 14 | 2449 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | * | het | 73.3265 | 90.1398 | 61.7994 | 65.3970 | 2450 | 268 | 2459 | 1520 | 1502 | 98.8158 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | * | 70.8083 | 66.3417 | 75.9196 | 88.0680 | 2450 | 1243 | 2456 | 779 | 514 | 65.9820 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | homalt | 99.6340 | 99.4722 | 99.7963 | 86.3079 | 2450 | 13 | 2450 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 61.8938 | 45.0533 | 98.8388 | 35.9607 | 2450 | 2988 | 2128 | 25 | 22 | 88.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | het | 88.2289 | 86.2117 | 90.3428 | 90.9621 | 2451 | 392 | 2451 | 262 | 132 | 50.3817 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.5603 | 90.2098 | 99.3517 | 87.1432 | 2451 | 266 | 2452 | 16 | 4 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 51.7623 | 87.4465 | 36.7612 | 44.5578 | 2452 | 352 | 2438 | 4194 | 3961 | 94.4444 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4125 | 98.9911 | 99.8375 | 43.7900 | 2453 | 25 | 2458 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9423 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9979 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | homalt | 99.4730 | 99.6346 | 99.3120 | 87.0152 | 2454 | 9 | 2454 | 17 | 6 | 35.2941 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | homalt | 99.7542 | 99.6752 | 99.8333 | 88.3918 | 2455 | 8 | 2396 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.4509 | 70.3322 | 91.2863 | 53.7682 | 2456 | 1036 | 1540 | 147 | 142 | 96.5986 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5138 | 99.1122 | 99.9186 | 36.8380 | 2456 | 22 | 2455 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | * | het | 86.1646 | 90.3606 | 82.3411 | 68.6094 | 2456 | 262 | 2448 | 525 | 508 | 96.7619 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.6821 | 90.4306 | 99.3530 | 87.4575 | 2457 | 260 | 2457 | 16 | 11 | 68.7500 | |
| gduggal-bwafb | INDEL | * | segdup | * | 97.4038 | 96.1659 | 98.6739 | 94.2256 | 2458 | 98 | 2530 | 34 | 21 | 61.7647 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3003 | 93.0030 | 99.8400 | 33.3511 | 2459 | 185 | 2496 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.3003 | 93.0030 | 99.8400 | 33.3511 | 2459 | 185 | 2496 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.7466 | 69.7674 | 98.6920 | 34.2284 | 2460 | 1066 | 2490 | 33 | 24 | 72.7273 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.7466 | 69.7674 | 98.6920 | 34.2284 | 2460 | 1066 | 2490 | 33 | 24 | 72.7273 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.9369 | 89.2961 | 96.8873 | 47.7240 | 2461 | 295 | 2459 | 79 | 77 | 97.4684 | |
| qzeng-custom | INDEL | I1_5 | map_siren | * | 88.5587 | 81.9301 | 96.3544 | 82.1964 | 2462 | 543 | 2643 | 100 | 24 | 24.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.2465 | 93.1191 | 97.4734 | 81.1308 | 2463 | 182 | 2469 | 64 | 5 | 7.8125 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5956 | 99.3947 | 99.7973 | 28.9459 | 2463 | 15 | 2462 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2105 | 99.3947 | 97.0542 | 49.5042 | 2463 | 15 | 2471 | 75 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | HG002complexvar | hetalt | 77.5562 | 66.5856 | 92.8550 | 56.3369 | 2463 | 1236 | 3119 | 240 | 203 | 84.5833 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6764 | 99.4350 | 99.9189 | 28.6252 | 2464 | 14 | 2464 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6360 | 99.4350 | 99.8379 | 27.9708 | 2464 | 14 | 2463 | 4 | 0 | 0.0000 | |