PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71401-71450 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5689 | 99.4260 | 99.7122 | 48.3103 | 2425 | 14 | 2425 | 7 | 3 | 42.8571 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 88.7047 | 91.7202 | 85.8812 | 83.6926 | 2426 | 219 | 2573 | 423 | 179 | 42.3168 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7328 | 99.4670 | 100.0000 | 48.0069 | 2426 | 13 | 2426 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdup | * | 96.6725 | 94.9531 | 98.4553 | 92.8290 | 2427 | 129 | 2422 | 38 | 23 | 60.5263 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8489 | 98.6987 | 98.9996 | 76.4157 | 2427 | 32 | 2375 | 24 | 15 | 62.5000 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | het | 89.5242 | 81.7722 | 98.8998 | 92.0567 | 2427 | 541 | 2427 | 27 | 9 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8693 | 98.6987 | 99.0405 | 76.6032 | 2427 | 32 | 2374 | 23 | 15 | 65.2174 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9105 | 98.7393 | 99.0822 | 76.8986 | 2428 | 31 | 2375 | 22 | 13 | 59.0909 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8899 | 98.7393 | 99.0409 | 76.8376 | 2428 | 31 | 2375 | 23 | 14 | 60.8696 | |
| gduggal-bwaplat | INDEL | * | map_l100_m1_e0 | * | 80.3840 | 67.7078 | 98.9002 | 92.0959 | 2428 | 1158 | 2428 | 27 | 10 | 37.0370 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.4630 | 88.1350 | 92.9173 | 49.6530 | 2429 | 327 | 2427 | 185 | 180 | 97.2973 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7598 | 99.6310 | 95.9575 | 59.6872 | 2430 | 9 | 2350 | 99 | 7 | 7.0707 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0012 | 99.6310 | 98.3793 | 56.8305 | 2430 | 9 | 2428 | 40 | 7 | 17.5000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.9136 | 81.0000 | 75.0538 | 73.8785 | 2430 | 570 | 2443 | 812 | 202 | 24.8768 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2200 | 98.0630 | 92.5373 | 51.0491 | 2430 | 48 | 2418 | 195 | 3 | 1.5385 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.5642 | 40.0198 | 96.4286 | 46.2791 | 2430 | 3642 | 2673 | 99 | 84 | 84.8485 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8152 | 99.6720 | 99.9589 | 50.5792 | 2431 | 8 | 2431 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_siren | homalt | 94.2088 | 91.6008 | 96.9697 | 74.6820 | 2432 | 223 | 2432 | 76 | 25 | 32.8947 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | homalt | 74.2731 | 59.5011 | 98.8021 | 79.7981 | 2433 | 1656 | 2392 | 29 | 29 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3861 | 99.7540 | 99.0208 | 56.4034 | 2433 | 6 | 2427 | 24 | 3 | 12.5000 | |
| jpowers-varprowl | INDEL | * | map_siren | homalt | 94.9463 | 91.6384 | 98.5020 | 74.3563 | 2433 | 222 | 2433 | 37 | 25 | 67.5676 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.7950 | 62.4006 | 76.6496 | 65.6998 | 2433 | 1466 | 2393 | 729 | 415 | 56.9273 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.7950 | 99.3947 | 49.7872 | 2434 | 5 | 2463 | 15 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8769 | 99.7950 | 99.9589 | 49.0692 | 2434 | 5 | 2434 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2102 | 88.3164 | 94.3001 | 47.2057 | 2434 | 322 | 2432 | 147 | 146 | 99.3197 | |
| qzeng-custom | INDEL | I16_PLUS | * | het | 85.2063 | 89.5879 | 81.2333 | 62.0542 | 2435 | 283 | 2740 | 633 | 156 | 24.6445 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 77.5375 | 77.3507 | 77.7253 | 87.2862 | 2435 | 713 | 2467 | 707 | 54 | 7.6379 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7542 | 99.8360 | 99.6725 | 49.7429 | 2435 | 4 | 2435 | 8 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | * | 75.2930 | 65.9626 | 87.6978 | 80.5947 | 2436 | 1257 | 2438 | 342 | 265 | 77.4854 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | homalt | 34.4676 | 20.8223 | 100.0000 | 92.2232 | 2436 | 9263 | 2436 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8361 | 99.8770 | 99.7952 | 51.6436 | 2436 | 3 | 2437 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.4421 | 98.3051 | 98.5795 | 46.6205 | 2436 | 42 | 2429 | 35 | 6 | 17.1429 | |
| jli-custom | SNP | * | map_l250_m1_e0 | homalt | 99.3477 | 98.9444 | 99.7544 | 84.2418 | 2437 | 26 | 2437 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8975 | 99.9180 | 99.8770 | 52.7132 | 2437 | 2 | 2437 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8352 | 99.9180 | 99.7526 | 51.8658 | 2437 | 2 | 2419 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | homalt | 99.2870 | 98.9444 | 99.6321 | 85.1090 | 2437 | 26 | 2437 | 9 | 7 | 77.7778 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6765 | 99.9590 | 99.3956 | 49.5528 | 2438 | 1 | 2467 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0313 | 89.5336 | 99.0048 | 44.4125 | 2438 | 285 | 2487 | 25 | 25 | 100.0000 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | homalt | 99.1258 | 98.9850 | 99.2671 | 82.5332 | 2438 | 25 | 2438 | 18 | 15 | 83.3333 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.9182 | 99.9590 | 99.8774 | 49.7020 | 2438 | 1 | 2444 | 3 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8976 | 100.0000 | 99.7954 | 52.3680 | 2439 | 0 | 2439 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8976 | 100.0000 | 99.7954 | 50.4360 | 2439 | 0 | 2439 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.1756 | 97.7947 | 96.5643 | 68.6200 | 2439 | 55 | 2389 | 85 | 10 | 11.7647 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7138 | 100.0000 | 99.4293 | 53.4182 | 2439 | 0 | 2439 | 14 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.2361 | 89.5703 | 99.4147 | 34.3662 | 2439 | 284 | 2548 | 15 | 14 | 93.3333 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8771 | 100.0000 | 99.7546 | 51.5937 | 2439 | 0 | 2439 | 6 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.9181 | 100.0000 | 99.8363 | 52.3782 | 2439 | 0 | 2439 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.9688 | 92.2844 | 99.9596 | 33.6636 | 2440 | 204 | 2476 | 1 | 1 | 100.0000 | |