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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71301-71350 / 86044 show all
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
93.8071
88.7770
99.4413
46.0843
238130189054
80.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7863
96.9500
96.6233
75.9515
23847523758374
89.1566
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3336
98.6760
100.0000
74.6486
238532238100
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50het
97.8866
96.2470
99.5832
25.6355
2385932389100
0.0000
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0040
98.6760
99.3342
81.0100
23853223871610
62.5000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2515
98.6760
99.8336
71.5436
238532240044
100.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50het
97.9878
96.2873
99.7494
25.8824
238692238860
0.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
59.2455
0.0000
0.0000
23871642000
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9430
98.7588
99.1279
78.7129
23873023872117
80.9524
ckim-vqsrSNPtimap_l100_m0_e0homalt
46.9836
30.7049
100.0000
82.8803
23875387238700
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
97.7933
97.8680
97.7188
57.0996
2387522356556
10.9091
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
45.2414
29.6315
95.6081
53.7572
238856712830130123
94.6154
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
45.2414
29.6315
95.6081
53.7572
238856712830130123
94.6154
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.5197
98.8415
83.4904
85.3580
238928239247336
7.6110
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.4900
97.9500
77.4308
59.1746
238950240570119
2.7104
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8787
94.0922
99.8354
35.2518
2389150242644
100.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.1489
40.2731
63.0429
36.1826
23893543484828422348
82.6179
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4177
98.8829
99.9582
72.7717
239027239411
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9357
90.3933
99.9588
34.5998
2390254242611
100.0000
ckim-isaacSNP*map_l250_m1_e0het
66.7411
50.2629
99.2937
91.8401
239023652390171
5.8824
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
50.3306
47.8296
53.1077
74.2686
23912608240121201904
89.8113
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
50.3306
47.8296
53.1077
74.2686
23912608240121201904
89.8113
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.4592
98.9243
100.0000
76.3325
239126238900
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7783
97.2753
98.2865
69.9578
23926734996150
81.9672
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
62.8647
0.0000
0.0000
23921413000
gduggal-bwavardSNP*map_l250_m1_e0homalt
98.2519
97.1579
99.3708
87.2425
23937023691510
66.6667
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2057
97.3566
99.0698
75.6937
23946523432211
50.0000
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9059
99.0898
98.7227
77.8437
23952223963126
83.8710
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_triTR_11to50*
81.6911
69.4493
99.1722
56.0007
239610542396205
25.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0651
94.4072
99.8769
35.3752
2397142243433
100.0000
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_triTR_11to50*
80.9810
69.4783
97.0481
57.6686
239710532400739
12.3288
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.2155
68.0091
89.3048
56.7130
239811286688079
98.7500
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.2155
68.0091
89.3048
56.7130
239811286688079
98.7500
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.9151
90.2558
95.7358
51.6673
23992592920913011194
91.7756
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3306
97.5600
99.1136
75.7051
2399602348217
33.3333
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6262
99.2553
100.0000
69.5205
239918237100
ltrigg-rtg2INDELI16_PLUS*het
93.4104
88.2634
99.1949
47.8107
23993192341197
36.8421
ltrigg-rtg1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0687
94.5254
99.7527
45.0883
2400139242065
83.3333
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50het
96.9633
96.8927
97.0341
36.0748
24017724217441
55.4054
cchapple-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
94.5648
0.0000
0.0000
2401138000
jlack-gatkSNP*map_l250_m1_e0homalt
98.5442
97.5639
99.5443
85.9993
2403602403118
72.7273
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.2759
99.4208
99.1315
77.0261
24031423972112
57.1429
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6889
99.4208
99.9584
73.0221
240314240311
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6683
99.4621
99.8754
72.2887
240413240433
100.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2911
97.7633
98.8245
75.3849
24045523542812
42.8571
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.0584
88.4799
81.8917
87.8767
24043132329515146
28.3495
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0423
99.4621
90.9985
80.5588
2404132406238191
80.2521
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6890
99.4621
99.9169
79.7698
240413240621
50.0000
astatham-gatkSNP*map_l250_m1_e0homalt
98.6256
97.6045
99.6683
85.3151
240459240487
87.5000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7097
99.4621
99.9584
72.8647
240413240411
100.0000