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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71251-71300 / 86044 show all
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3458
99.4510
99.2408
86.4188
23551323531814
77.7778
anovak-vgSNPtvmap_l250_m2_e1*
74.0862
80.7956
68.4057
91.5330
235656023471084260
23.9852
eyeh-varpipeINDELI16_PLUS**
50.2841
36.9610
78.6262
37.5078
235740202358641639
99.6880
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.8529
99.4937
87.0432
60.7107
2358122358351351
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
90.7836
84.1298
98.5804
37.3201
235944523613427
79.4118
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.6115
86.6324
99.4771
37.4276
235936424731312
92.3077
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
88.2045
85.6313
90.9371
50.7128
23603962358235230
97.8723
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0270
99.5781
96.5235
48.1882
23601023608584
98.8235
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7466
96.0553
99.4986
53.1009
23629769453529
82.8571
ciseli-customINDEL*map_l100_m1_e0*
70.4613
65.9230
75.6705
87.5050
236412222370762504
66.1417
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5997
99.7468
99.4531
47.3533
2364623641313
100.0000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5999
99.7890
99.4115
47.4486
2365523651413
92.8571
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
96.1382
99.7890
92.7451
61.9630
236552365185184
99.4595
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.8528
89.4478
98.7142
36.5693
236527923803129
93.5484
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3956
93.1863
99.8338
31.7550
2366173240344
100.0000
gduggal-snapvardINDELD6_15HG002complexvarhet
73.6293
75.8333
71.5498
53.1509
236675428671140832
72.9825
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3956
93.1863
99.8338
31.7550
2366173240344
100.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6381
99.8312
97.4731
45.6429
2366423536161
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9325
86.8895
99.8788
38.1155
2366357247333
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4745
99.8312
99.1202
49.1587
2366423662120
95.2381
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.9502
97.0480
96.8526
49.3747
23677224317939
49.3671
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7284
99.9156
97.5690
55.8647
2368223685957
96.6102
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3497
99.9156
98.7902
51.5758
2368223682929
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7701
99.9578
97.6102
56.2071
2369123695857
98.2759
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6672
99.9578
97.4095
54.3286
2369123696362
98.4127
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7701
99.9578
97.6102
56.2071
2369123695857
98.2759
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7706
100.0000
97.5710
56.3208
2370023705959
100.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0554
100.0000
96.1851
55.9528
2370023709493
98.9362
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7706
100.0000
97.5710
56.1473
2370023705959
100.0000
cchapple-customSNP*map_l250_m1_e0homalt
98.0976
96.3053
99.9578
83.7177
237291237111
100.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5801
93.4226
99.9585
35.8626
2372167240811
100.0000
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
91.8784
97.2530
87.0667
62.6011
237267233634710
2.8818
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1509
37.5633
45.4962
49.7904
23743946337940483339
82.4852
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1509
37.5633
45.4962
49.7904
23743946337940483339
82.4852
gduggal-snapvardINDELI6_15HG002complexvar*
55.8350
49.5825
63.8921
47.3893
23752415279415791240
78.5307
ghariani-varprowlSNP*map_l250_m1_e0homalt
98.0400
96.4677
99.6644
87.9687
237687237684
50.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8387
96.7060
98.9983
70.9717
2378812372243
12.5000
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7434
96.7060
96.7809
72.0820
23788123457834
43.5897
eyeh-varpipeINDEL*segdup*
93.9572
93.0360
94.8968
96.9158
23781782529136123
90.4412
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6886
93.6983
99.8760
34.6569
2379160241633
100.0000
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.6962
98.4278
82.3875
81.4243
2379382381509127
24.9509
jpowers-varprowlSNP*map_l250_m1_e0homalt
98.0829
96.5895
99.6231
89.3663
237984237995
55.5556
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.9951
96.7873
99.2334
74.5777
23807923301813
72.2222
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.3331
34.4623
43.1834
76.0195
2381452824203184342
10.7412
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
90.8247
87.1204
94.8579
42.0846
23813522103114109
95.6140
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.3154
98.5106
96.1490
77.8952
23813622729131
34.0659
anovak-vgINDEL*map_sirenhomalt
77.1234
89.6798
67.6512
75.5300
2381274240511501080
93.9130
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.1695
90.0530
98.6804
37.0620
238126323933228
87.5000