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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71201-71250 / 86044 show all
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.9507
98.3108
99.5989
82.2763
232840223590
0.0000
jmaeng-gatkSNPtvmap_l100_m0_e0homalt
75.4210
60.5564
99.9571
72.3081
23291517232911
100.0000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.8091
85.5307
99.0822
46.3398
232939423752222
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1277
98.3122
99.9569
36.7876
233040231711
100.0000
ckim-gatkINDELI6_15HG002complexvarhet
99.3586
98.9384
99.7824
59.6346
233025229354
80.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
68.3237
77.6667
60.9872
71.9758
2330670358322921410
61.5183
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
59.2422
42.8650
95.8708
51.4971
23313107234510190
89.1089
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1071
98.3544
99.8715
46.8458
233139233133
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
81.8508
71.2279
96.1979
32.2123
23329426806269258
95.9108
dgrover-gatkINDELI6_15HG002complexvarhet
99.4230
99.0658
99.7827
59.6952
233322229654
80.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0778
85.6776
99.5114
35.1466
233339024441212
100.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.2342
85.6776
99.8774
37.7987
2333390244433
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.2667
91.9260
98.8593
33.2487
233420528603331
93.9394
ltrigg-rtg1INDELI16_PLUS*het
92.1773
85.9088
99.4326
48.0027
23353832278135
38.4615
mlin-fermikitINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
64.3730
59.4553
70.1776
54.1149
233615932332991976
98.4864
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1434
98.6909
99.6000
82.9235
233731224190
0.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2779
98.6498
99.9141
39.6579
233832232622
100.0000
eyeh-varpipeINDELI6_15HG002compoundhethetalt
42.7960
27.4218
97.4089
29.0841
2341619624066463
98.4375
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.1666
95.2420
97.1093
71.1366
234211723186936
52.1739
mlin-fermikitINDEL*map_l100_m1_e0*
74.7799
65.3095
87.4627
78.8610
234212442344336264
78.5714
anovak-vgINDELD6_15HG002complexvarhet
77.7392
75.0641
80.6119
50.1246
23427782582621443
71.3366
ckim-gatkSNPtvmap_l150_m0_e0*
71.0339
56.1092
96.7755
93.2891
234218322341787
8.9744
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
50.1218
86.1980
35.3337
81.4035
234237524144418249
5.6360
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.5210
93.9856
99.1970
53.9957
23441502347192
10.5263
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.8050
86.0815
98.3438
38.2217
234437924944235
83.3333
eyeh-varpipeINDELI6_15*hetalt
42.6506
27.4354
95.7540
48.5714
234662052413107106
99.0654
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
79.5052
66.5627
98.6958
53.7549
2347117923463128
90.3226
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.5052
66.5627
98.6958
53.7549
2347117923463128
90.3226
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.0510
92.4380
99.9581
32.0604
2347192238311
100.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1341
99.1132
99.1550
87.2227
2347212347208
40.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8835
99.1132
98.6549
87.3860
23472123473217
53.1250
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3862
99.1554
99.6182
87.6455
234820234898
88.8889
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
98.3471
97.3466
99.3684
59.4294
2348642360159
60.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3235
99.1976
99.4496
87.1665
23491923491313
100.0000
gduggal-snapplatSNPtvmap_l250_m2_e1*
86.4238
80.5556
93.2143
94.3146
2349567234917171
41.5205
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
86.2651
0.0000
0.0000
2349374000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.5950
86.3019
99.8782
37.9441
2350373246033
100.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.4346
41.3660
99.4845
45.9233
2350333123161211
91.6667
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1148
92.5561
99.9581
35.3992
2350189238611
100.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
94.8741
95.6080
94.1515
50.7143
23511089160569536
94.2004
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.4949
86.3386
99.5964
37.6133
235137224681010
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4293
99.3243
99.5345
87.4555
23521623521110
90.9091
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1785
92.6743
99.9582
35.8734
2353186238911
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4505
99.3666
99.5347
87.4509
23531523531110
90.9091
jmaeng-gatkSNPtvmap_l150_m0_e0*
71.1604
56.3967
96.3949
93.3607
235418202353886
6.8182
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5351
99.4510
99.6193
87.6224
235513235599
100.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
66.0556
65.0014
67.1446
72.1458
23551268327816041089
67.8928
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1822
92.7531
99.8747
34.7506
2355184239133
100.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4720
99.4510
99.4930
87.3253
23551323551211
91.6667
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.2279
99.3671
97.1146
56.0984
23551523567066
94.2857