PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
71001-71050 / 86044 show all
mlin-fermikitINDELI1_5map_siren*
83.5106
74.6755
94.7168
75.2199
22447612241125111
88.8000
ndellapenna-hhgaINDELD1_5map_sirenhet
98.4865
98.5946
98.3786
78.7325
22453222453715
40.5405
cchapple-customINDELD1_5map_sirenhet
97.0834
98.5946
95.6177
79.2698
224532229110510
9.5238
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
88.1251
98.2495
79.8925
44.0994
2245402229561501
89.3048
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8666
99.7336
100.0000
51.5008
22466224600
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
47.8508
44.9290
51.1791
74.3426
22462753225721532109
97.9563
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
47.8508
44.9290
51.1791
74.3426
22462753225721532109
97.9563
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4582
22475224700
ndellapenna-hhgaINDEL*map_l100_m2_e0het
97.3029
97.3992
97.2067
83.9816
22476022626526
40.0000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.1157
91.3786
83.2329
63.6787
22472122209445437
98.2022
ckim-dragenINDELD1_5map_sirenhet
97.9286
98.6825
97.1861
82.8253
2247302245654
6.1539
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4175
22475226200
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
48.0532
22484222800
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
54.2066
22484224800
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.5976
99.8224
97.4026
57.6846
2248422506049
81.6667
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
51.4674
22493224900
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
53.2144
22493230700
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
95.6226
93.3223
98.0392
55.3589
225016122504542
93.3333
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.0358
22502225000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7080
99.9112
97.5335
63.5201
2250222545732
56.1404
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.8162
99.9112
97.7450
61.5346
2250222545232
61.5385
raldana-dualsentieonINDELD1_5map_sirenhet
99.0760
98.8142
99.3392
78.2192
2250272255151
6.6667
gduggal-bwavardINDELD1_5map_sirenhet
93.7475
98.8142
89.1751
86.6713
225027221626992
34.2007
eyeh-varpipeINDELD1_5map_sirenhet
98.6360
98.8142
98.4583
78.5963
22502723633714
37.8378
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8211
99.9112
99.7312
57.1511
22502222663
50.0000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.9781
22502225000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9334
99.9112
99.9556
51.6538
22502225011
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
51.6129
22502225000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.9120
22511225100
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.6849
22511225100
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
53.1919
22511225100
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.4033
22511225100
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.1405
98.5558
99.7323
38.6532
225233223561
16.6667
egarrison-hhgaINDELD1_5map_sirenhet
98.6006
98.9899
98.2143
79.8047
22542322554114
34.1463
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.6618
55.8168
43.1327
62.9167
22551785505366624317
64.8004
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
94.9172
93.4909
96.3878
56.5468
22551573122117109
93.1624
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
95.9629
98.6871
93.3851
38.4673
2255302287162154
95.0617
qzeng-customINDELI6_15HG002complexvarhet
94.4892
95.7962
93.2173
56.1507
225699262519160
31.4136
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.5160
59.0220
97.4456
46.9644
2257156720605442
77.7778
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
83.9455
85.0094
82.9080
59.5221
22573983216663302
45.5505
ltrigg-rtg2INDEL*map_l100_m2_e1het
97.4082
96.3295
98.5114
78.5661
2257862250344
11.7647
rpoplin-dv42INDELD1_5map_sirenhet
99.0134
99.1217
98.9054
80.0820
2257202259257
28.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.0268
98.8184
99.2361
41.7338
22582727282110
47.6190
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.7820
95.3547
26.7520
84.5618
225811023406407146
2.2788
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_diTR_11to50het
82.8907
73.1218
95.6723
82.2308
2258830227710319
18.4466
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
88.7892
84.1909
93.9189
55.0542
22584249736362
98.4127
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
95.7760
98.8184
92.9153
39.9217
2258272282174166
95.4023
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.3838
98.8184
99.9558
47.5296
225827226110
0.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.3623
98.8621
99.8675
43.6567
225926226230
0.0000
jpowers-varprowlINDEL*segdup*
89.1593
88.3803
89.9522
94.2165
22592972256252223
88.4921