PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71001-71050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | map_siren | * | 83.5106 | 74.6755 | 94.7168 | 75.2199 | 2244 | 761 | 2241 | 125 | 111 | 88.8000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | het | 98.4865 | 98.5946 | 98.3786 | 78.7325 | 2245 | 32 | 2245 | 37 | 15 | 40.5405 | |
| cchapple-custom | INDEL | D1_5 | map_siren | het | 97.0834 | 98.5946 | 95.6177 | 79.2698 | 2245 | 32 | 2291 | 105 | 10 | 9.5238 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.1251 | 98.2495 | 79.8925 | 44.0994 | 2245 | 40 | 2229 | 561 | 501 | 89.3048 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8666 | 99.7336 | 100.0000 | 51.5008 | 2246 | 6 | 2246 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 47.8508 | 44.9290 | 51.1791 | 74.3426 | 2246 | 2753 | 2257 | 2153 | 2109 | 97.9563 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 47.8508 | 44.9290 | 51.1791 | 74.3426 | 2246 | 2753 | 2257 | 2153 | 2109 | 97.9563 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8889 | 99.7780 | 100.0000 | 51.4582 | 2247 | 5 | 2247 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | het | 97.3029 | 97.3992 | 97.2067 | 83.9816 | 2247 | 60 | 2262 | 65 | 26 | 40.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.1157 | 91.3786 | 83.2329 | 63.6787 | 2247 | 212 | 2209 | 445 | 437 | 98.2022 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8889 | 99.7780 | 100.0000 | 51.4175 | 2247 | 5 | 2262 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9111 | 99.8224 | 100.0000 | 48.0532 | 2248 | 4 | 2228 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9111 | 99.8224 | 100.0000 | 54.2066 | 2248 | 4 | 2248 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5976 | 99.8224 | 97.4026 | 57.6846 | 2248 | 4 | 2250 | 60 | 49 | 81.6667 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9333 | 99.8668 | 100.0000 | 51.4674 | 2249 | 3 | 2249 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9333 | 99.8668 | 100.0000 | 53.2144 | 2249 | 3 | 2307 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.6226 | 93.3223 | 98.0392 | 55.3589 | 2250 | 161 | 2250 | 45 | 42 | 93.3333 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 52.0358 | 2250 | 2 | 2250 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7080 | 99.9112 | 97.5335 | 63.5201 | 2250 | 2 | 2254 | 57 | 32 | 56.1404 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.8162 | 99.9112 | 97.7450 | 61.5346 | 2250 | 2 | 2254 | 52 | 32 | 61.5385 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | het | 93.7475 | 98.8142 | 89.1751 | 86.6713 | 2250 | 27 | 2216 | 269 | 92 | 34.2007 | |
| eyeh-varpipe | INDEL | D1_5 | map_siren | het | 98.6360 | 98.8142 | 98.4583 | 78.5963 | 2250 | 27 | 2363 | 37 | 14 | 37.8378 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8211 | 99.9112 | 99.7312 | 57.1511 | 2250 | 2 | 2226 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 52.9781 | 2250 | 2 | 2250 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9334 | 99.9112 | 99.9556 | 51.6538 | 2250 | 2 | 2250 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9556 | 99.9112 | 100.0000 | 51.6129 | 2250 | 2 | 2250 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.9120 | 2251 | 1 | 2251 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.6849 | 2251 | 1 | 2251 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 53.1919 | 2251 | 1 | 2251 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.4033 | 2251 | 1 | 2251 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1405 | 98.5558 | 99.7323 | 38.6532 | 2252 | 33 | 2235 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | het | 98.6006 | 98.9899 | 98.2143 | 79.8047 | 2254 | 23 | 2255 | 41 | 14 | 34.1463 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 48.6618 | 55.8168 | 43.1327 | 62.9167 | 2255 | 1785 | 5053 | 6662 | 4317 | 64.8004 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.9172 | 93.4909 | 96.3878 | 56.5468 | 2255 | 157 | 3122 | 117 | 109 | 93.1624 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.9629 | 98.6871 | 93.3851 | 38.4673 | 2255 | 30 | 2287 | 162 | 154 | 95.0617 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | het | 94.4892 | 95.7962 | 93.2173 | 56.1507 | 2256 | 99 | 2625 | 191 | 60 | 31.4136 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.5160 | 59.0220 | 97.4456 | 46.9644 | 2257 | 1567 | 2060 | 54 | 42 | 77.7778 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.9455 | 85.0094 | 82.9080 | 59.5221 | 2257 | 398 | 3216 | 663 | 302 | 45.5505 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | het | 97.4082 | 96.3295 | 98.5114 | 78.5661 | 2257 | 86 | 2250 | 34 | 4 | 11.7647 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | het | 99.0134 | 99.1217 | 98.9054 | 80.0820 | 2257 | 20 | 2259 | 25 | 7 | 28.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0268 | 98.8184 | 99.2361 | 41.7338 | 2258 | 27 | 2728 | 21 | 10 | 47.6190 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.7820 | 95.3547 | 26.7520 | 84.5618 | 2258 | 110 | 2340 | 6407 | 146 | 2.2788 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.7892 | 84.1909 | 93.9189 | 55.0542 | 2258 | 424 | 973 | 63 | 62 | 98.4127 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.7760 | 98.8184 | 92.9153 | 39.9217 | 2258 | 27 | 2282 | 174 | 166 | 95.4023 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3838 | 98.8184 | 99.9558 | 47.5296 | 2258 | 27 | 2261 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3623 | 98.8621 | 99.8675 | 43.6567 | 2259 | 26 | 2262 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | segdup | * | 89.1593 | 88.3803 | 89.9522 | 94.2165 | 2259 | 297 | 2256 | 252 | 223 | 88.4921 | |