PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
70851-70900 / 86044 show all | |||||||||||||||
eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
mlin-fermikit | SNP | tv | map_l100_m0_e0 | homalt | 61.5471 | 56.9943 | 66.8904 | 49.7701 | 2192 | 1654 | 2192 | 1085 | 1011 | 93.1797 | |
qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7726 | 99.6365 | 99.9090 | 41.7859 | 2193 | 8 | 2195 | 2 | 1 | 50.0000 | |
gduggal-bwavard | INDEL | * | map_l100_m1_e0 | het | 89.9219 | 98.1208 | 82.9876 | 89.4070 | 2193 | 42 | 2200 | 451 | 184 | 40.7982 | |
hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | * | 98.2545 | 98.5618 | 97.9492 | 88.0799 | 2193 | 32 | 2197 | 46 | 7 | 15.2174 | |
jli-custom | INDEL | * | map_l100_m1_e0 | het | 98.3638 | 98.1208 | 98.6080 | 83.1747 | 2193 | 42 | 2196 | 31 | 9 | 29.0323 | |
gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7273 | 99.6820 | 99.7726 | 43.0753 | 2194 | 7 | 2194 | 5 | 4 | 80.0000 | |
jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1191 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
ghariani-varprowl | INDEL | * | map_l100_m1_e0 | het | 90.5454 | 98.1655 | 84.0230 | 89.3321 | 2194 | 41 | 2193 | 417 | 195 | 46.7626 | |
ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1496 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
dgrover-gatk | SNP | tv | map_l125_m0_e0 | homalt | 99.2760 | 98.7843 | 99.7726 | 69.4073 | 2194 | 27 | 2194 | 5 | 3 | 60.0000 | |
gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5691 | 99.7274 | 99.4112 | 46.0147 | 2195 | 6 | 2195 | 13 | 6 | 46.1538 | |
jlack-gatk | INDEL | * | map_l100_m1_e0 | het | 93.6574 | 98.2103 | 89.5079 | 89.1540 | 2195 | 40 | 2201 | 258 | 20 | 7.7519 | |
jmaeng-gatk | INDEL | * | map_l100_m1_e0 | het | 96.0483 | 98.2103 | 93.9795 | 90.0412 | 2195 | 40 | 2201 | 141 | 14 | 9.9291 | |
ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8635 | 99.7274 | 100.0000 | 40.2446 | 2195 | 6 | 2199 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7001 | 46.0184 | 98.3531 | 38.3761 | 2196 | 2576 | 1911 | 32 | 29 | 90.6250 | |
ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.7728 | 100.0000 | 39.6930 | 2196 | 5 | 2200 | 0 | 0 | ||
ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7955 | 99.7728 | 99.8183 | 42.2613 | 2196 | 5 | 2197 | 4 | 3 | 75.0000 | |
gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.1174 | 96.1050 | 96.1298 | 45.0129 | 2196 | 89 | 2459 | 99 | 35 | 35.3535 | |
bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | * | 98.3668 | 98.6966 | 98.0392 | 88.5574 | 2196 | 29 | 2200 | 44 | 9 | 20.4545 | |
hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | het | 98.5219 | 98.2998 | 98.7450 | 82.8675 | 2197 | 38 | 2203 | 28 | 5 | 17.8571 | |
gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8183 | 99.8183 | 99.8183 | 42.3560 | 2197 | 4 | 2198 | 4 | 3 | 75.0000 | |
gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7414 | 97.6021 | 99.9075 | 50.0923 | 2198 | 54 | 2161 | 2 | 0 | 0.0000 | |
astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8864 | 99.8637 | 99.9091 | 41.9065 | 2198 | 3 | 2198 | 2 | 2 | 100.0000 | |
gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4705 | 97.6021 | 99.3545 | 52.3611 | 2198 | 54 | 2155 | 14 | 7 | 50.0000 | |
ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6307 | 91.1655 | 96.2330 | 58.6113 | 2198 | 213 | 2197 | 86 | 83 | 96.5116 | |
rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.8637 | 100.0000 | 42.6858 | 2198 | 3 | 2198 | 0 | 0 | ||
eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7733 | 99.9091 | 99.6378 | 40.5384 | 2199 | 2 | 2201 | 8 | 4 | 50.0000 | |
gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 81.7039 | 73.7672 | 91.5543 | 53.9843 | 2199 | 782 | 1290 | 119 | 114 | 95.7983 | |
dgrover-gatk | INDEL | * | map_l100_m1_e0 | het | 98.1505 | 98.3893 | 97.9130 | 86.6398 | 2199 | 36 | 2205 | 47 | 10 | 21.2766 | |
jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5482 | 99.9091 | 99.1899 | 44.8772 | 2199 | 2 | 2204 | 18 | 12 | 66.6667 | |
jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8864 | 99.9091 | 99.8638 | 41.8076 | 2199 | 2 | 2199 | 3 | 2 | 66.6667 | |
hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.7232 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.4084 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.3026 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8865 | 99.9091 | 99.8638 | 42.0263 | 2199 | 2 | 2200 | 3 | 3 | 100.0000 | |
asubramanian-gatk | SNP | * | map_l150_m1_e0 | homalt | 32.6455 | 19.5068 | 100.0000 | 91.9371 | 2199 | 9074 | 2199 | 0 | 0 | ||
ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1675 | 99.9091 | 98.4368 | 44.5929 | 2199 | 2 | 2204 | 35 | 13 | 37.1429 | |
raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.8384 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |
dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.9457 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |
asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | * | 94.4206 | 93.9769 | 94.8685 | 35.6370 | 2200 | 141 | 2200 | 119 | 109 | 91.5966 | |
bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.9151 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |
anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.9539 | 97.6909 | 98.2183 | 50.5289 | 2200 | 52 | 2205 | 40 | 32 | 80.0000 | |
cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.9546 | 99.8181 | 38.5067 | 2200 | 1 | 2195 | 4 | 2 | 50.0000 | |
jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 100.0000 | 99.8639 | 41.8470 | 2201 | 0 | 2201 | 3 | 3 | 100.0000 | |
hfeng-pmm2 | INDEL | * | map_l100_m1_e0 | het | 98.0433 | 98.4787 | 97.6117 | 85.3524 | 2201 | 34 | 2207 | 54 | 7 | 12.9630 | |
ckim-isaac | SNP | ti | map_l125_m0_e0 | homalt | 65.7804 | 49.0314 | 99.9093 | 59.9855 | 2202 | 2289 | 2202 | 2 | 2 | 100.0000 | |
ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.5256 | 99.1896 | 99.8640 | 68.2316 | 2203 | 18 | 2203 | 3 | 2 | 66.6667 |