PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70001-70050 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.6583 | 87.5470 | 98.4034 | 64.1001 | 1863 | 265 | 1849 | 30 | 27 | 90.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3114 | 96.4304 | 98.2086 | 62.1384 | 1864 | 69 | 1864 | 34 | 34 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5287 | 70.4992 | 91.2109 | 53.4545 | 1864 | 780 | 467 | 45 | 45 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 96.7824 | 97.3368 | 96.2343 | 82.5675 | 1864 | 51 | 1840 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.1191 | 96.5339 | 97.7114 | 58.6675 | 1866 | 67 | 1964 | 46 | 42 | 91.3043 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.2662 | 89.1543 | 100.0000 | 44.8215 | 1866 | 227 | 1886 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.5661 | 87.7820 | 91.4243 | 69.1078 | 1868 | 260 | 1855 | 174 | 164 | 94.2529 | |
| jli-custom | SNP | tv | map_l250_m2_e0 | het | 97.5202 | 96.2887 | 98.7837 | 86.3722 | 1868 | 72 | 1868 | 23 | 8 | 34.7826 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 53.5363 | 39.1660 | 84.5632 | 59.4976 | 1869 | 2903 | 1868 | 341 | 287 | 84.1642 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.6150 | 69.6868 | 98.4699 | 49.2653 | 1869 | 813 | 1802 | 28 | 24 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 55.2299 | 52.5133 | 58.2428 | 71.2539 | 1870 | 1691 | 1876 | 1345 | 1229 | 91.3755 | |
| jlack-gatk | INDEL | I16_PLUS | HG002compoundhet | * | 89.6882 | 87.2608 | 92.2546 | 52.5070 | 1870 | 273 | 1870 | 157 | 144 | 91.7197 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.5543 | 84.6990 | 37.0542 | 41.5748 | 1871 | 338 | 2161 | 3671 | 3393 | 92.4271 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8304 | 69.7614 | 98.9490 | 45.2532 | 1871 | 811 | 1883 | 20 | 20 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0742 | 99.2047 | 98.9440 | 72.8770 | 1871 | 15 | 1874 | 20 | 6 | 30.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3884 | 99.2047 | 99.5729 | 68.2811 | 1871 | 15 | 1865 | 8 | 7 | 87.5000 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | het | 96.2715 | 96.4948 | 96.0493 | 91.3378 | 1872 | 68 | 1872 | 77 | 5 | 6.4935 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.4462 | 95.8525 | 91.1578 | 42.6611 | 1872 | 81 | 1866 | 181 | 162 | 89.5028 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | het | 96.7209 | 96.5464 | 96.8960 | 89.9730 | 1873 | 67 | 1873 | 60 | 11 | 18.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3254 | 96.9477 | 97.7059 | 65.2032 | 1874 | 59 | 1874 | 44 | 43 | 97.7273 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.4366 | 50.8272 | 60.9654 | 44.0200 | 1874 | 1813 | 2046 | 1310 | 988 | 75.4198 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.0487 | 95.9549 | 90.3133 | 42.3771 | 1874 | 79 | 1874 | 201 | 56 | 27.8607 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9112 | 96.9995 | 98.8403 | 60.5859 | 1875 | 58 | 1875 | 22 | 21 | 95.4545 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.8868 | 97.0512 | 98.7368 | 59.9494 | 1876 | 57 | 1876 | 24 | 23 | 95.8333 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | * | 97.4531 | 96.7509 | 98.1656 | 84.4194 | 1876 | 63 | 1873 | 35 | 8 | 22.8571 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.6463 | 96.0573 | 87.6226 | 43.6282 | 1876 | 77 | 1876 | 265 | 94 | 35.4717 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | het | 83.6323 | 80.1110 | 87.4775 | 89.7782 | 1877 | 466 | 2431 | 348 | 54 | 15.5172 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 98.1438 | 98.0157 | 98.2723 | 83.6389 | 1877 | 38 | 1877 | 33 | 12 | 36.3636 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | * | 97.2808 | 96.8025 | 97.7639 | 88.7174 | 1877 | 62 | 1880 | 43 | 6 | 13.9535 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1838 | 92.7372 | 95.6762 | 65.3122 | 1877 | 147 | 1903 | 86 | 6 | 6.9767 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | het | 80.4626 | 96.7526 | 68.8676 | 92.0365 | 1877 | 63 | 1867 | 844 | 29 | 3.4360 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9134 | 97.1029 | 98.7375 | 60.0294 | 1877 | 56 | 1877 | 24 | 23 | 95.8333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5570 | 98.0157 | 99.1043 | 82.2749 | 1877 | 38 | 1881 | 17 | 5 | 29.4118 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6319 | 98.0157 | 97.2510 | 85.8443 | 1877 | 38 | 1875 | 53 | 6 | 11.3208 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | het | 85.7607 | 82.4769 | 89.3168 | 89.6940 | 1878 | 399 | 2157 | 258 | 42 | 16.2791 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | het | 97.3057 | 95.5725 | 99.1029 | 86.9625 | 1878 | 87 | 1878 | 17 | 8 | 47.0588 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0557 | 88.2519 | 98.4127 | 61.7176 | 1878 | 250 | 1860 | 30 | 25 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | het | 97.4585 | 96.8557 | 98.0689 | 89.2184 | 1879 | 61 | 1879 | 37 | 1 | 2.7027 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7612 | 99.6819 | 99.8407 | 71.1771 | 1880 | 6 | 1880 | 3 | 2 | 66.6667 | |
| cchapple-custom | SNP | tv | map_l250_m2_e1 | het | 94.5928 | 95.6743 | 93.5356 | 91.6445 | 1880 | 85 | 1881 | 130 | 24 | 18.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | het | 98.0955 | 96.9072 | 99.3133 | 87.4569 | 1880 | 60 | 1880 | 13 | 5 | 38.4615 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0955 | 97.0088 | 99.2068 | 77.5974 | 1881 | 58 | 1876 | 15 | 2 | 13.3333 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7085 | 99.7349 | 99.6820 | 71.4048 | 1881 | 5 | 1881 | 6 | 3 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7615 | 99.7879 | 99.7350 | 71.4307 | 1882 | 4 | 1882 | 5 | 4 | 80.0000 | |