PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
69801-69850 / 86044 show all
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.0284
92.9570
99.3097
38.0196
179513620141414
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.0284
92.9570
99.3097
38.0196
179513620141414
100.0000
jmaeng-gatkINDELD16_PLUS*hetalt
96.0050
92.9126
99.3103
38.0720
179613720161414
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.3087
93.0088
99.8513
37.7661
1796135201433
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3087
93.0088
99.8513
37.7661
1796135201433
100.0000
ltrigg-rtg2SNPtvmap_l250_m2_e1het
95.4049
91.3995
99.7774
74.6007
1796169179340
0.0000
ndellapenna-hhgaINDELD1_5map_l100_m1_e0*
97.6365
97.2403
98.0360
81.9551
17975117973617
47.2222
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0083
98.1431
99.8888
50.8470
179734179720
0.0000
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.7182
95.3340
98.1431
70.1548
17988817973422
64.7059
raldana-dualsentieonINDELD16_PLUS*hetalt
96.3126
93.0160
99.8515
37.8079
1798135201733
100.0000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
61.5928
47.2536
88.4257
46.3421
179820071803236207
87.7119
asubramanian-gatkINDELD16_PLUSHG002compoundhethetalt
95.9105
93.3091
98.6612
26.6062
179912919162622
84.6154
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.0827
98.9005
93.4211
85.4634
179920156211076
69.0909
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.0827
98.9005
93.4211
85.4634
179920156211076
69.0909
cchapple-customINDELD1_5map_l100_m1_e0*
96.7211
97.3485
96.1018
81.7490
1799491775729
12.5000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
79.9416
70.8547
91.7021
52.3810
17997404313939
100.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
54.8776
37.8708
99.6098
30.9469
18002953178777
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.4629
98.9555
94.0928
85.7865
18001915619866
67.3469
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.4629
98.9555
94.0928
85.7865
18001915619866
67.3469
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.5189
98.9555
94.1994
86.2906
18001915599669
71.8750
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.5189
98.9555
94.1994
86.2906
18001915599669
71.8750
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.7983
98.3069
99.2946
51.3464
1800311830132
15.3846
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.6445
93.2160
98.2030
39.3698
180013120223731
83.7838
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.6445
93.2160
98.2030
39.3698
180013120223731
83.7838
asubramanian-gatkINDELD16_PLUS*hetalt
95.6218
93.1712
98.2048
39.4536
180113220243731
83.7838
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.3699
99.0104
93.8665
85.7412
180118156110270
68.6275
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.3699
99.0104
93.8665
85.7412
180118156110270
68.6275
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
83.5589
88.9822
78.7587
90.6848
1801223180248614
2.8807
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.2770
99.0654
93.6413
86.2049
180217156110670
66.0377
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.2770
99.0654
93.6413
86.2049
180217156110670
66.0377
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2055
93.3713
99.2172
39.1486
180312820281616
100.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2055
93.3713
99.2172
39.1486
180312820281616
100.0000
ckim-dragenINDELD16_PLUSHG002compoundhethetalt
96.4348
93.5685
99.4824
26.5399
180412419221010
100.0000
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
83.2650
74.7927
93.9018
56.7791
1804608181711862
52.5424
hfeng-pmm3INDELD16_PLUSHG002compoundhethetalt
96.6774
93.5685
100.0000
26.2024
1804124191800
hfeng-pmm1INDELD1_5map_l100_m1_e0*
98.4990
97.6190
99.3949
80.5561
1804441807111
9.0909
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0937
98.5254
99.6685
47.3225
180427180460
0.0000
jli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
88.6545
85.9115
91.5784
51.4278
18052961729159156
98.1132
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0398
98.5800
99.5039
51.7553
180526180591
11.1111
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
77.4344
74.8652
80.1862
50.9245
18056061809447421
94.1834
ckim-dragenINDELD16_PLUS*hetalt
96.2097
93.3782
99.2184
39.1860
180512820311616
100.0000
hfeng-pmm1INDELD16_PLUSHG002compoundhethetalt
96.7327
93.6722
100.0000
26.4571
1806122191800
rpoplin-dv42INDELI16_PLUSHG002compoundhet*
89.3838
84.2744
95.1528
48.3959
180633718069290
97.8261
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.9589
98.6346
99.2853
46.9834
1806251806130
0.0000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.6100
45.3313
45.8922
57.7778
18062178286033722355
69.8399
hfeng-pmm2INDELD16_PLUSHG002compoundhethetalt
96.7604
93.7241
100.0000
26.3804
1807121192000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1767
98.6892
99.6691
48.1704
180724180760
0.0000
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6136
93.5785
99.8523
38.4918
1807124202833
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6136
93.5785
99.8523
38.4918
1807124202833
100.0000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
88.4335
83.8126
93.5937
65.9030
1807349179712360
48.7805