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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1390 1391 1392 1393 1394 1395 1396 1397 1398 ... 1720 1721 » 69651-69700 / 86044 show all
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	95.1724	96.1517	94.2128	83.1481	1749	70	1514	93	61	65.5914
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4598	98.9813	99.9429	61.0494	1749	18	1751	1	1	100.0000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2924	99.2063	99.3785	88.6959	1750	14	1759	11	11	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7927	97.6562	97.9295	69.6398	1750	42	1750	37	33	89.1892
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1782	99.2063	99.1501	88.9866	1750	14	1750	15	13	86.6667
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2068	99.2630	99.1506	88.9811	1751	13	1751	15	13	86.6667
ckim-dragen	SNP	ti	map_l250_m2_e1	homalt	99.1226	98.8149	99.4321	83.6687	1751	21	1751	10	9	90.0000
ndellapenna-hhga	SNP	ti	map_l250_m2_e1	homalt	99.3193	98.8149	99.8290	86.9124	1751	21	1751	3	3	100.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	84.5148	96.2617	75.3230	67.9780	1751	68	3556	1165	308	26.4378
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	84.5148	96.2617	75.3230	67.9780	1751	68	3556	1165	308	26.4378
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3996	88.8382	59.6839	72.7955	1751	220	1775	1199	1169	97.4979
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3996	88.8382	59.6839	72.7955	1751	220	1775	1199	1169	97.4979
ghariani-varprowl	SNP	tv	map_l250_m1_e0	het	92.9690	98.0414	88.3956	91.8864	1752	35	1752	230	31	13.4783
qzeng-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	73.2113	82.3308	65.9106	63.8478	1752	376	1947	1007	294	29.1956
ciseli-custom	SNP	ti	map_l250_m1_e0	het	63.3134	59.0633	68.2225	93.3005	1753	1215	1754	817	20	2.4480
ciseli-custom	SNP	tv	map_l250_m2_e0	*	66.4506	60.8258	73.2218	92.3535	1753	1129	1750	640	134	20.9375
ckim-vqsr	SNP	tv	map_l125_m2_e1	homalt	44.7879	28.8607	99.9430	87.9632	1753	4321	1753	1	0	0.0000
gduggal-bwavard	SNP	tv	map_l250_m1_e0	het	84.6644	98.0974	74.4672	92.2745	1753	34	1747	599	12	2.0033
ltrigg-rtg1	INDEL	D16_PLUS	HG002compoundhet	hetalt	94.9583	90.9232	99.3682	22.2073	1753	175	1730	11	11	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.7294	90.7820	99.0357	41.6612	1753	178	1746	17	17	100.0000
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.7294	90.7820	99.0357	41.6612	1753	178	1746	17	17	100.0000
jli-custom	SNP	ti	map_l250_m2_e1	homalt	99.4331	98.9842	99.8861	85.6066	1754	18	1754	2	2	100.0000
cchapple-custom	INDEL	D16_PLUS	HG002compoundhet	hetalt	0.0000	90.9751	0.0000	0.0000	1754	174	0	0	0
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	90.8338	0.0000	0.0000	1754	177	0	0	0
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	90.8338	0.0000	0.0000	1754	177	0	0	0
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7159	97.8795	97.5528	69.2597	1754	38	1754	44	33	75.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	homalt	99.3768	98.9842	99.7725	86.1825	1754	18	1754	4	3	75.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	64.9017	48.2133	99.2588	53.0137	1754	1884	1741	13	10	76.9231
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	hetalt	95.0565	90.9751	99.5213	25.2782	1754	174	1871	9	9	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	94.8587	90.8856	99.1952	37.8556	1755	176	1972	16	15	93.7500
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6310	99.3209	99.9431	59.6415	1755	12	1755	1	1	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.6502	96.4816	96.8193	81.9352	1755	64	1522	50	37	74.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.6502	96.4816	96.8193	81.9352	1755	64	1522	50	37	74.0000
ltrigg-rtg1	INDEL	D16_PLUS	*	hetalt	94.7356	90.7915	99.0379	41.7792	1755	178	1750	17	17	100.0000
ckim-vqsr	SNP	ti	map_l250_m2_e0	het	69.6152	53.9336	98.1544	97.0778	1755	1499	1755	33	0	0.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3490	99.4898	99.2086	89.1572	1755	9	1755	14	13	92.8571
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3771	99.4898	99.2647	88.8454	1755	9	1755	13	11	84.6154
bgallagher-sentieon	SNP	tv	map_l250_m1_e0	het	97.5542	98.2093	96.9078	89.8378	1755	32	1755	56	8	14.2857
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6595	99.3775	99.9431	60.9816	1756	11	1756	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	*	hetalt	94.8361	90.8432	99.1960	37.9289	1756	177	1974	16	15	93.7500
cchapple-custom	INDEL	D16_PLUS	*	hetalt	0.0000	90.8432	0.0000	0.0000	1756	177	0	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.8001	97.9911	97.6098	69.6269	1756	36	1756	43	31	72.0930
raldana-dualsentieon	SNP	ti	map_l250_m2_e1	homalt	99.4901	99.0971	99.8862	85.3999	1756	16	1756	2	1	50.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.9637	97.9911	97.9364	69.6975	1756	36	1756	37	31	83.7838
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	71.6762	82.1328	63.5814	72.1033	1756	382	2734	1566	1053	67.2414
gduggal-bwafb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	80.0682	72.8027	88.9447	68.9160	1756	656	885	110	104	94.5455
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.9103	98.0469	97.7741	69.5010	1757	35	1757	40	30	75.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7164	99.4907	99.9431	60.9458	1758	9	1758	1	1	100.0000

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