PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69451-69500 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.4919 | 1704 | 0 | 1704 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.9774 | 1704 | 0 | 1704 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.9774 | 1704 | 0 | 1704 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0096 | 1704 | 0 | 1704 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | SNP | tv | func_cds | homalt | 99.9120 | 100.0000 | 99.8243 | 29.4045 | 1704 | 0 | 1704 | 3 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.8356 | 1704 | 0 | 1704 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6351 | 1704 | 0 | 1704 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6351 | 1704 | 0 | 1704 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6018 | 1704 | 0 | 1704 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 28.0101 | 1704 | 0 | 1704 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.3664 | 1704 | 0 | 1684 | 0 | 0 | ||
| ckim-dragen | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.6781 | 1704 | 0 | 1704 | 0 | 0 | ||
| cchapple-custom | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.1656 | 1704 | 0 | 1704 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 56.5351 | 42.3182 | 85.1372 | 53.5880 | 1705 | 2324 | 1707 | 298 | 259 | 86.9128 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | het | 84.2881 | 73.9489 | 97.9885 | 86.2255 | 1706 | 601 | 1705 | 35 | 15 | 42.8571 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | homalt | 98.6412 | 97.5415 | 99.7661 | 86.8218 | 1706 | 43 | 1706 | 4 | 3 | 75.0000 | |
| cchapple-custom | SNP | tv | map_l250_m1_e0 | het | 94.4921 | 95.5232 | 93.4830 | 91.0657 | 1707 | 80 | 1707 | 119 | 24 | 20.1681 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | * | 93.6112 | 92.3701 | 94.8860 | 83.6796 | 1707 | 141 | 1707 | 92 | 63 | 68.4783 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.9241 | 70.7711 | 94.4782 | 66.0416 | 1707 | 705 | 1711 | 100 | 97 | 97.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1044 | 93.8977 | 98.4174 | 74.4802 | 1708 | 111 | 1679 | 27 | 14 | 51.8519 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2339 | 95.3125 | 99.2344 | 58.7664 | 1708 | 84 | 1685 | 13 | 10 | 76.9231 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3024 | 98.7283 | 99.8831 | 33.4500 | 1708 | 22 | 1709 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.3518 | 88.3601 | 94.5531 | 56.1456 | 1708 | 225 | 1788 | 103 | 103 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 43.8042 | 29.8151 | 82.5243 | 69.3041 | 1709 | 4023 | 1700 | 360 | 316 | 87.7778 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0537 | 93.9527 | 98.2507 | 73.2824 | 1709 | 110 | 1685 | 30 | 15 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.0537 | 93.9527 | 98.2507 | 73.2824 | 1709 | 110 | 1685 | 30 | 15 | 50.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | homalt | 98.1620 | 96.4447 | 99.9415 | 84.8962 | 1709 | 63 | 1708 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3028 | 98.7861 | 99.8249 | 33.3463 | 1709 | 21 | 1710 | 3 | 2 | 66.6667 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | homalt | 98.7576 | 97.7130 | 99.8248 | 86.3182 | 1709 | 40 | 1709 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 52.2084 | 35.8340 | 96.1392 | 47.0737 | 1710 | 3062 | 2017 | 81 | 81 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.1057 | 79.3599 | 89.4551 | 69.7220 | 1711 | 445 | 1773 | 209 | 166 | 79.4258 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | homalt | 55.1813 | 38.1207 | 99.8832 | 84.5557 | 1712 | 2779 | 1710 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 24.0720 | 0.0000 | 0.0000 | 1712 | 5400 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3616 | 98.9595 | 99.7670 | 33.2686 | 1712 | 18 | 1713 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3905 | 98.9595 | 99.8252 | 33.0994 | 1712 | 18 | 1713 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3908 | 99.0173 | 99.7672 | 36.4175 | 1713 | 17 | 1714 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l150_m0_e0 | het | 67.3971 | 60.2533 | 76.4627 | 88.5079 | 1713 | 1130 | 1712 | 527 | 18 | 3.4156 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4269 | 99.0751 | 99.7811 | 30.6904 | 1714 | 16 | 1823 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4777 | 99.0751 | 99.8835 | 34.2649 | 1714 | 16 | 1715 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.6073 | 97.0006 | 94.2535 | 58.3072 | 1714 | 53 | 1755 | 107 | 94 | 87.8505 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7046 | 95.7031 | 97.7273 | 60.0519 | 1715 | 77 | 1806 | 42 | 37 | 88.0952 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0190 | 98.1121 | 99.9429 | 58.3888 | 1715 | 33 | 1750 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | het | 94.3085 | 95.9709 | 92.7027 | 86.6223 | 1715 | 72 | 1715 | 135 | 48 | 35.5556 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 88.3683 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 89.5879 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4204 | 99.1329 | 99.7095 | 36.8209 | 1715 | 15 | 1716 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5646 | 99.1329 | 100.0000 | 30.3228 | 1715 | 15 | 1705 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2764 | 99.1329 | 99.4203 | 34.7086 | 1715 | 15 | 1715 | 10 | 10 | 100.0000 | |