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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
68351-68400 / 86044 show all
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2965
99.2968
99.2963
87.3102
1412101411106
60.0000
ckim-isaacINDEL*segduphet
97.0051
96.3165
97.7035
93.8034
14125414043320
60.6061
hfeng-pmm3INDEL*map_l150_m2_e1*
98.1943
98.1237
98.2651
88.7746
1412271416256
24.0000
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.9782
94.3258
99.7842
76.6072
141385138732
66.6667
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.2221
93.4610
97.0508
84.9985
14159914154317
39.5349
ckim-gatkINDEL*map_l150_m2_e1*
95.7468
98.3322
93.2939
93.1304
141524141910210
9.8039
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.8316
98.2639
71.5886
71.6226
141525140655811
1.9713
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5072
99.1591
99.8579
31.1980
141512140522
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
41.7793
36.0397
49.6933
42.7847
14162513145814761368
92.6829
hfeng-pmm2INDEL*map_l150_m2_e1*
97.8966
98.4712
97.3288
90.4206
1417221421397
17.9487
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.4079
40.5785
44.4101
31.8353
14172075201425212293
90.9560
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
87.8250
81.9075
94.6642
24.8939
141731315088584
98.8235
gduggal-snapplatSNPtimap_l250_m2_e1homalt
88.8192
80.0226
99.7887
88.9408
1418354141733
100.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
68.0749
52.0749
98.2675
53.6013
1418130514182524
96.0000
bgallagher-sentieonINDEL*map_l150_m2_e1*
97.9994
98.5407
97.4640
90.7582
1418211422378
21.6216
cchapple-customSNP*map_l250_m0_e0het
94.5598
94.1567
94.9664
94.4554
14188814157520
26.6667
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
83.8715
77.0358
92.0384
65.7901
1419423134111685
73.2759
jli-customSNP*map_l250_m0_e0het
96.5658
94.2895
98.9547
90.3152
1420861420157
46.6667
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.6843
99.5795
99.7893
29.7830
14216142131
33.3333
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5761
99.5795
99.5726
29.1625
14216139862
33.3333
gduggal-bwafbINDELD16_PLUS*homalt
85.6946
83.9835
87.4769
60.7791
14212711418203203
100.0000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.0251
98.7500
99.3017
67.9499
14221814221010
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7545
99.6496
99.8596
26.6735
14225142222
100.0000
ciseli-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
97.6881
99.6496
95.8023
36.3088
1422514156231
50.0000
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8596
99.7197
100.0000
23.7942
14234142200
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
98.3774
99.7197
97.0708
30.6893
1423414254341
95.3488
qzeng-customINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
84.1984
77.2530
92.5161
66.6953
1423419143411691
78.4483
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7896
99.7197
99.8596
27.8116
14234142322
100.0000
gduggal-snapvardINDEL*map_l100_m0_e0*
85.1994
91.0429
80.0608
87.9508
14231402108525180
34.2857
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
34.2641
93.9894
20.9509
81.3237
1423911507568693
1.6356
gduggal-snapfbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.2685
99.7898
98.7526
38.0155
142431425183
16.6667
jpowers-varprowlINDEL*map_l100_m0_e0*
92.1981
91.1068
93.3159
87.0820
1424139142410264
62.7451
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8598
99.7898
99.9299
26.0373
14243142511
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8598
99.7898
99.9299
28.4855
14243142510
0.0000
ndellapenna-hhgaSNP*map_l250_m0_e0het
96.7742
94.6215
99.0271
92.2359
1425811425145
35.7143
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.8598
99.9299
27.9657
14252142610
0.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
23.7460
14261142811
100.0000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
66.5492
86.1631
54.2091
50.6979
1426229143612131206
99.4229
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
24.2713
14261142811
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.9299
99.8599
26.8443
14261142622
100.0000
ciseli-customSNPtimap_l250_m2_e1homalt
82.2049
80.4740
84.0118
87.5404
14263461424271196
72.3247
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.8817
14270142711
100.0000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4087
100.0000
98.8243
35.3599
1427014291710
58.8235
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
27.1057
14270142711
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.4433
100.0000
98.8927
33.8067
142701429169
56.2500
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
27.1057
14270142711
100.0000
ckim-isaacINDEL*map_l125_m2_e0*
78.3417
64.9818
98.6169
88.3010
14277691426208
40.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.9939
14270142711
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.8443
14270142711
100.0000