PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67551-67600 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | * | 38.3420 | 26.7738 | 67.5124 | 60.4148 | 1283 | 3509 | 1224 | 589 | 145 | 24.6180 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | hetalt | 48.8074 | 34.6851 | 82.3281 | 84.4012 | 1283 | 2416 | 1365 | 293 | 225 | 76.7918 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 89.1469 | 90.2954 | 88.0272 | 87.4552 | 1284 | 138 | 1294 | 176 | 110 | 62.5000 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 78.3315 | 84.6966 | 72.8563 | 89.5793 | 1284 | 232 | 1283 | 478 | 11 | 2.3013 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | * | 97.5313 | 95.9641 | 99.1506 | 83.9469 | 1284 | 54 | 1284 | 11 | 1 | 9.0909 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.4567 | 61.1138 | 68.1865 | 74.1910 | 1284 | 817 | 1316 | 614 | 580 | 94.4625 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9824 | 97.9405 | 98.0243 | 36.9430 | 1284 | 27 | 1290 | 26 | 13 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4663 | 97.1991 | 99.7669 | 60.2778 | 1284 | 37 | 1284 | 3 | 1 | 33.3333 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3045 | 99.1512 | 99.4582 | 87.3902 | 1285 | 11 | 1285 | 7 | 6 | 85.7143 | |
| astatham-gatk | INDEL | * | map_l150_m1_e0 | * | 96.6569 | 96.0389 | 97.2830 | 90.5512 | 1285 | 53 | 1289 | 36 | 7 | 19.4444 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3045 | 99.1512 | 99.4582 | 87.3902 | 1285 | 11 | 1285 | 7 | 6 | 85.7143 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | * | 96.2213 | 96.0389 | 96.4045 | 93.0291 | 1285 | 53 | 1287 | 48 | 6 | 12.5000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5441 | 97.3505 | 99.7673 | 61.8300 | 1286 | 35 | 1286 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3818 | 99.2284 | 99.5356 | 87.4927 | 1286 | 10 | 1286 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | * | 96.5735 | 96.1136 | 97.0378 | 95.4187 | 1286 | 52 | 1769 | 54 | 37 | 68.5185 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5441 | 97.3505 | 99.7673 | 60.9276 | 1286 | 35 | 1286 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | * | 92.6847 | 91.3352 | 94.0746 | 90.7989 | 1286 | 122 | 1286 | 81 | 52 | 64.1975 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.7711 | 98.2429 | 99.3050 | 67.4541 | 1286 | 23 | 1286 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | het | 95.7558 | 96.3296 | 95.1887 | 89.3639 | 1286 | 49 | 1286 | 65 | 7 | 10.7692 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | homalt | 81.9434 | 80.0871 | 83.8878 | 86.5926 | 1287 | 320 | 1286 | 247 | 174 | 70.4453 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4301 | 93.6681 | 91.2243 | 68.7320 | 1287 | 87 | 1289 | 124 | 91 | 73.3871 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5452 | 97.4262 | 99.6902 | 60.4957 | 1287 | 34 | 1287 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.6839 | 72.6708 | 98.6312 | 33.2487 | 1287 | 484 | 1297 | 18 | 13 | 72.2222 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 90.3792 | 84.8945 | 96.6216 | 83.4493 | 1287 | 229 | 1287 | 45 | 5 | 11.1111 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | * | 96.2856 | 96.1165 | 96.4552 | 81.4147 | 1287 | 52 | 2068 | 76 | 58 | 76.3158 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 96.5143 | 94.0789 | 99.0790 | 85.3464 | 1287 | 81 | 1291 | 12 | 4 | 33.3333 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3822 | 99.3056 | 99.4590 | 87.2487 | 1287 | 9 | 1287 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | het | 96.7178 | 96.4794 | 96.9573 | 84.9956 | 1288 | 47 | 1657 | 52 | 30 | 57.6923 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5840 | 97.5019 | 99.6904 | 61.7751 | 1288 | 33 | 1288 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | * | 96.2243 | 96.2631 | 96.1855 | 90.5619 | 1288 | 50 | 1286 | 51 | 9 | 17.6471 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 85.6607 | 94.4974 | 78.3354 | 70.0293 | 1288 | 75 | 1280 | 354 | 318 | 89.8305 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 87.0389 | 78.1079 | 98.2759 | 48.3680 | 1288 | 361 | 171 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.9256 | 98.4721 | 99.3832 | 67.6397 | 1289 | 20 | 1289 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9783 | 96.9173 | 93.1153 | 84.1668 | 1289 | 41 | 1082 | 80 | 71 | 88.7500 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | hetalt | 97.5431 | 95.3402 | 99.8501 | 71.8149 | 1289 | 63 | 1332 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| astatham-gatk | INDEL | * | map_l125_m2_e0 | het | 94.9267 | 92.7390 | 97.2201 | 89.8845 | 1290 | 101 | 1294 | 37 | 5 | 13.5135 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | homalt | 98.3607 | 97.1386 | 99.6139 | 76.6034 | 1290 | 38 | 1290 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.7816 | 94.2982 | 93.2706 | 87.7493 | 1290 | 78 | 1289 | 93 | 34 | 36.5591 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | * | 95.9035 | 96.4152 | 95.3972 | 84.7728 | 1291 | 48 | 1285 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | het | 93.4243 | 92.8109 | 94.0459 | 85.2736 | 1291 | 100 | 1311 | 83 | 14 | 16.8675 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | * | 97.5776 | 96.4152 | 98.7683 | 82.4696 | 1291 | 48 | 1283 | 16 | 5 | 31.2500 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 37.3916 | 32.4297 | 44.1462 | 77.4584 | 1292 | 2692 | 1776 | 2247 | 890 | 39.6084 | |