PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67501-67550 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.2985 | 99.4536 | 99.1440 | 84.8877 | 1274 | 7 | 1274 | 11 | 6 | 54.5455 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7786 | 91.3262 | 96.3664 | 84.5822 | 1274 | 121 | 1273 | 48 | 35 | 72.9167 | |
| jpowers-varprowl | SNP | ti | map_l250_m0_e0 | * | 93.0946 | 92.9927 | 93.1968 | 94.8911 | 1274 | 96 | 1274 | 93 | 19 | 20.4301 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.6637 | 96.0090 | 99.3765 | 82.5845 | 1275 | 53 | 1275 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | homalt | 63.8458 | 46.9095 | 99.9216 | 93.0622 | 1275 | 1443 | 1275 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | hetalt | 79.6129 | 66.1307 | 100.0000 | 26.1105 | 1275 | 653 | 1364 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6384 | 95.7207 | 99.6345 | 39.6588 | 1275 | 57 | 5180 | 19 | 17 | 89.4737 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | * | 96.3775 | 95.2915 | 97.4886 | 88.7239 | 1275 | 63 | 1281 | 33 | 7 | 21.2121 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.5844 | 94.0959 | 49.1648 | 73.3293 | 1275 | 80 | 1295 | 1339 | 1224 | 91.4115 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | * | 98.3417 | 97.4026 | 99.2991 | 67.2031 | 1275 | 34 | 1275 | 9 | 8 | 88.8889 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.7029 | 96.5935 | 98.8381 | 61.3357 | 1276 | 45 | 1276 | 15 | 13 | 86.6667 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | * | 90.3416 | 95.3662 | 85.8199 | 91.3779 | 1276 | 62 | 1277 | 211 | 47 | 22.2749 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.9792 | 78.9116 | 99.4012 | 47.6489 | 1276 | 341 | 166 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 79.5102 | 66.0798 | 99.7928 | 43.7451 | 1276 | 655 | 1445 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 79.5102 | 66.0798 | 99.7928 | 43.7451 | 1276 | 655 | 1445 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1161 | 96.5935 | 99.6875 | 59.6596 | 1276 | 45 | 1276 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.5539 | 97.1103 | 98.0015 | 52.6392 | 1277 | 38 | 1275 | 26 | 18 | 69.2308 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.0049 | 67.7625 | 91.8950 | 70.9693 | 1278 | 608 | 1610 | 142 | 132 | 92.9577 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1944 | 96.7449 | 99.6880 | 59.3016 | 1278 | 43 | 1278 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | * | 98.4592 | 97.6318 | 99.3007 | 66.7785 | 1278 | 31 | 1278 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0504 | 96.7449 | 99.3916 | 61.8066 | 1278 | 43 | 1307 | 8 | 8 | 100.0000 | |
| ckim-gatk | SNP | * | map_l250_m2_e1 | homalt | 63.9640 | 47.0199 | 100.0000 | 93.4676 | 1278 | 1440 | 1278 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 77.2684 | 79.2312 | 75.4005 | 60.0913 | 1278 | 335 | 1318 | 430 | 259 | 60.2326 | |
| mlin-fermikit | INDEL | D16_PLUS | * | hetalt | 79.5358 | 66.1148 | 99.7932 | 43.8033 | 1278 | 655 | 1448 | 3 | 2 | 66.6667 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 89.1561 | 84.4122 | 94.4649 | 85.8278 | 1278 | 236 | 1280 | 75 | 7 | 9.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.0471 | 96.0902 | 74.6866 | 62.8554 | 1278 | 52 | 2800 | 949 | 275 | 28.9779 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.0448 | 95.6587 | 96.4340 | 58.7351 | 1278 | 58 | 1271 | 47 | 25 | 53.1915 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.2811 | 94.3173 | 48.7547 | 73.3962 | 1278 | 77 | 1292 | 1358 | 1314 | 96.7599 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.7895 | 79.0971 | 98.6283 | 41.6540 | 1279 | 338 | 1510 | 21 | 19 | 90.4762 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | het | 97.3392 | 95.8052 | 98.9231 | 79.2399 | 1279 | 56 | 1286 | 14 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 31.1996 | 1280 | 50 | 1279 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | het | 97.3032 | 95.8801 | 98.7692 | 85.2424 | 1280 | 55 | 1284 | 16 | 1 | 6.2500 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.7458 | 97.3384 | 98.1567 | 52.5683 | 1280 | 35 | 1278 | 24 | 17 | 70.8333 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 76.9409 | 66.2700 | 91.7077 | 66.5255 | 1281 | 652 | 1305 | 118 | 98 | 83.0508 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 88.6737 | 96.3158 | 82.1551 | 76.7252 | 1281 | 49 | 1197 | 260 | 253 | 97.3077 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2739 | 96.9720 | 99.6112 | 61.8511 | 1281 | 40 | 1281 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | * | 98.3871 | 97.8610 | 98.9189 | 67.3392 | 1281 | 28 | 1281 | 14 | 14 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 62.4499 | 90.8511 | 47.5768 | 61.6650 | 1281 | 129 | 1286 | 1417 | 1364 | 96.2597 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | het | 83.6174 | 95.9551 | 74.0909 | 89.7946 | 1281 | 54 | 1793 | 627 | 240 | 38.2775 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | * | 98.6149 | 97.9374 | 99.3018 | 67.0164 | 1282 | 27 | 1280 | 9 | 8 | 88.8889 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.6154 | 97.9374 | 99.3029 | 66.7953 | 1282 | 27 | 1282 | 9 | 9 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6913 | 98.9198 | 98.4639 | 87.5787 | 1282 | 14 | 1282 | 20 | 9 | 45.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4114 | 96.3910 | 96.4318 | 79.9786 | 1282 | 48 | 1081 | 40 | 36 | 90.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.8825 | 98.9969 | 98.7683 | 87.0977 | 1283 | 13 | 1283 | 16 | 6 | 37.5000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2650 | 98.9969 | 99.5345 | 87.4939 | 1283 | 13 | 1283 | 6 | 4 | 66.6667 | |