PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67351-67400 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | * | 76.7469 | 67.5325 | 88.8730 | 76.4647 | 1248 | 600 | 1246 | 156 | 136 | 87.1795 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.5367 | 69.6429 | 87.4488 | 64.9114 | 1248 | 544 | 1282 | 184 | 127 | 69.0217 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7151 | 96.2963 | 91.2688 | 89.1952 | 1248 | 48 | 1338 | 128 | 35 | 27.3438 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9433 | 96.4451 | 99.4887 | 36.9705 | 1248 | 46 | 1362 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2278 | 94.9810 | 97.5078 | 52.7941 | 1249 | 66 | 1252 | 32 | 24 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9833 | 96.5224 | 99.4891 | 37.1848 | 1249 | 45 | 1363 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.2439 | 87.5263 | 99.7608 | 37.2372 | 1249 | 178 | 1251 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 51.6619 | 87.8340 | 36.5923 | 82.4916 | 1249 | 173 | 1280 | 2218 | 108 | 4.8693 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | homalt | 98.1532 | 97.5020 | 98.8133 | 82.2920 | 1249 | 32 | 1249 | 15 | 11 | 73.3333 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | hetalt | 94.4661 | 92.3817 | 96.6468 | 71.8658 | 1249 | 103 | 1297 | 45 | 45 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.0099 | 99.1277 | 98.8924 | 84.9649 | 1250 | 11 | 1250 | 14 | 6 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.8073 | 91.3743 | 96.3735 | 84.4642 | 1250 | 118 | 1249 | 47 | 34 | 72.3404 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 77.3036 | 0.0000 | 0.0000 | 1250 | 367 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | homalt | 99.2070 | 99.2070 | 99.2070 | 85.1821 | 1251 | 10 | 1251 | 10 | 5 | 50.0000 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.1677 | 99.2070 | 99.1284 | 85.1721 | 1251 | 10 | 1251 | 11 | 6 | 54.5455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9007 | 95.1331 | 98.7352 | 48.1982 | 1251 | 64 | 1249 | 16 | 11 | 68.7500 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8631 | 95.1331 | 98.6572 | 48.4108 | 1251 | 64 | 1249 | 17 | 12 | 70.5882 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6982 | 98.8933 | 98.5039 | 87.7567 | 1251 | 14 | 1251 | 19 | 13 | 68.4211 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | homalt | 99.1284 | 99.2070 | 99.0499 | 83.3333 | 1251 | 10 | 1251 | 12 | 6 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | homalt | 98.6597 | 97.6581 | 99.6820 | 78.7966 | 1251 | 30 | 1254 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1672 | 98.7382 | 93.7267 | 89.6330 | 1252 | 16 | 1255 | 84 | 6 | 7.1429 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3201 | 98.9723 | 99.6702 | 83.1011 | 1252 | 13 | 1209 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 63.8133 | 53.4814 | 79.0931 | 40.7537 | 1252 | 1089 | 1343 | 355 | 284 | 80.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | homalt | 99.2469 | 99.2863 | 99.2076 | 82.1525 | 1252 | 9 | 1252 | 10 | 4 | 40.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | * | 90.7660 | 93.5026 | 88.1850 | 85.4828 | 1252 | 87 | 1754 | 235 | 108 | 45.9574 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.8228 | 58.1169 | 61.6319 | 75.6941 | 1253 | 903 | 1624 | 1011 | 502 | 49.6538 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | homalt | 96.9441 | 94.3524 | 99.6823 | 78.3751 | 1253 | 75 | 1255 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1690 | 99.0514 | 99.2868 | 87.9764 | 1253 | 12 | 1253 | 9 | 4 | 44.4444 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 98.6620 | 98.8170 | 98.5075 | 82.6685 | 1253 | 15 | 1254 | 19 | 5 | 26.3158 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3600 | 99.0514 | 99.6705 | 83.4424 | 1253 | 12 | 1210 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3262 | 99.0514 | 99.6025 | 88.3465 | 1253 | 12 | 1253 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6609 | 95.5759 | 99.8390 | 31.3433 | 1253 | 58 | 1240 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| hfeng-pmm2 | INDEL | * | map_l100_m2_e0 | homalt | 99.1690 | 99.3656 | 98.9731 | 82.9472 | 1253 | 8 | 1253 | 13 | 6 | 46.1538 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7893 | 96.6821 | 98.9221 | 82.4044 | 1253 | 43 | 1193 | 13 | 1 | 7.6923 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4597 | 95.3612 | 97.5838 | 52.4639 | 1254 | 61 | 1252 | 31 | 26 | 83.8710 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | homalt | 63.6387 | 46.6865 | 99.9203 | 93.0743 | 1254 | 1432 | 1254 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 94.5568 | 92.7515 | 96.4339 | 73.6698 | 1254 | 98 | 1298 | 48 | 47 | 97.9167 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | homalt | 99.1696 | 99.4449 | 98.8959 | 84.6359 | 1254 | 7 | 1254 | 14 | 6 | 42.8571 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.2874 | 99.4449 | 99.1304 | 84.8358 | 1254 | 7 | 1254 | 11 | 6 | 54.5455 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 98.7031 | 98.8959 | 98.5110 | 85.7047 | 1254 | 14 | 1257 | 19 | 3 | 15.7895 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.0579 | 95.3612 | 98.8161 | 48.1800 | 1254 | 61 | 1252 | 15 | 10 | 66.6667 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 93.6001 | 98.9748 | 88.7791 | 88.5873 | 1255 | 13 | 1258 | 159 | 10 | 6.2893 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.2387 | 96.8364 | 99.6823 | 87.5285 | 1255 | 41 | 1255 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | het | 91.5448 | 98.9748 | 85.1525 | 89.0375 | 1255 | 13 | 1256 | 219 | 64 | 29.2237 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3666 | 99.2095 | 99.5242 | 88.1418 | 1255 | 10 | 1255 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6555 | 81.5055 | 88.0587 | 71.2392 | 1256 | 285 | 1261 | 171 | 87 | 50.8772 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | hetalt | 94.8411 | 92.8994 | 96.8657 | 72.1182 | 1256 | 96 | 1298 | 42 | 42 | 100.0000 | |