PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66501-66550 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1840 | 99.0942 | 99.2740 | 86.3749 | 1094 | 10 | 1094 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0478 | 92.5550 | 97.6786 | 60.5911 | 1094 | 88 | 1094 | 26 | 23 | 88.4615 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | * | 99.4999 | 99.1840 | 99.8179 | 94.3988 | 1094 | 9 | 1096 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2888 | 95.8808 | 98.7387 | 78.3161 | 1094 | 47 | 1096 | 14 | 11 | 78.5714 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 55.2770 | 84.4907 | 41.0749 | 86.9620 | 1095 | 201 | 1070 | 1535 | 61 | 3.9739 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.1395 | 99.1848 | 99.0942 | 85.7787 | 1095 | 9 | 1094 | 10 | 8 | 80.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0950 | 99.1848 | 99.0054 | 86.2506 | 1095 | 9 | 1095 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.2108 | 82.2072 | 78.3091 | 58.4509 | 1095 | 237 | 1130 | 313 | 202 | 64.5367 | |
| ckim-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.3088 | 98.9160 | 97.7090 | 68.8770 | 1095 | 12 | 853 | 20 | 10 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | * | 99.5010 | 99.3654 | 99.6370 | 94.5866 | 1096 | 7 | 1098 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2076 | 96.0561 | 98.3871 | 78.6982 | 1096 | 45 | 1098 | 18 | 11 | 61.1111 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | * | 96.8249 | 99.3654 | 94.4110 | 96.0107 | 1096 | 7 | 1098 | 65 | 2 | 3.0769 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4555 | 99.2754 | 99.6364 | 86.7438 | 1096 | 8 | 1096 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | * | 91.9463 | 95.8880 | 88.3159 | 89.5819 | 1096 | 47 | 1096 | 145 | 27 | 18.6207 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.2539 | 96.1437 | 98.3900 | 80.1773 | 1097 | 44 | 1100 | 18 | 16 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.0404 | 76.1806 | 98.8320 | 80.6905 | 1097 | 343 | 1100 | 13 | 2 | 15.3846 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | * | 86.4583 | 83.8044 | 89.2857 | 60.9632 | 1097 | 212 | 1100 | 132 | 51 | 38.6364 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | * | 99.4565 | 99.4560 | 99.4570 | 94.0511 | 1097 | 6 | 1099 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | * | 99.6820 | 99.4560 | 99.9091 | 93.9277 | 1097 | 6 | 1099 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0967 | 99.3659 | 98.8288 | 86.9442 | 1097 | 7 | 1097 | 13 | 4 | 30.7692 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | homalt | 95.7280 | 94.0068 | 97.5133 | 74.2805 | 1098 | 70 | 1098 | 28 | 6 | 21.4286 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5016 | 99.4565 | 99.5467 | 86.5782 | 1098 | 6 | 1098 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | D1_5 | segdup | * | 98.1263 | 99.5467 | 96.7458 | 96.0214 | 1098 | 5 | 1100 | 37 | 2 | 5.4054 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5016 | 99.4565 | 99.5467 | 86.5782 | 1098 | 6 | 1098 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 91.0865 | 87.4204 | 95.0735 | 88.4658 | 1098 | 158 | 1100 | 57 | 6 | 10.5263 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.6177 | 84.7222 | 69.9283 | 81.0889 | 1098 | 198 | 1365 | 587 | 286 | 48.7223 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.7368 | 93.2088 | 96.3158 | 71.7892 | 1098 | 80 | 1098 | 42 | 35 | 83.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_siren | homalt | 96.4427 | 94.0068 | 99.0081 | 73.9977 | 1098 | 70 | 1098 | 11 | 6 | 54.5455 | |
| jli-custom | INDEL | D1_5 | segdup | * | 99.5918 | 99.5467 | 99.6370 | 94.3313 | 1098 | 5 | 1098 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | * | 99.6373 | 99.5467 | 99.7280 | 94.0940 | 1098 | 5 | 1100 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.9665 | 85.1278 | 100.0000 | 30.7314 | 1099 | 192 | 1127 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4769 | 97.1706 | 99.8188 | 42.1384 | 1099 | 32 | 1102 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | * | 97.5135 | 99.6374 | 95.4783 | 95.4077 | 1099 | 4 | 1098 | 52 | 1 | 1.9231 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4743 | 97.4291 | 99.5421 | 56.2675 | 1099 | 29 | 1087 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.3449 | 96.3190 | 98.3929 | 80.3302 | 1099 | 42 | 1102 | 18 | 16 | 88.8889 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5922 | 99.5471 | 99.6374 | 86.6820 | 1099 | 5 | 1099 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5020 | 99.5471 | 99.4570 | 86.4067 | 1099 | 5 | 1099 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | * | 99.5476 | 99.6374 | 99.4580 | 94.7935 | 1099 | 4 | 1101 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | * | 96.9583 | 96.1505 | 97.7798 | 88.0289 | 1099 | 44 | 1101 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 92.9780 | 0.0000 | 0.0000 | 1099 | 83 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6105 | 97.2591 | 100.0000 | 41.6754 | 1100 | 31 | 1107 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.5410 | 96.4067 | 98.7024 | 79.1406 | 1100 | 41 | 1217 | 16 | 12 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5686 | 97.2591 | 99.9139 | 42.5606 | 1100 | 31 | 1161 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | het | 83.2747 | 87.6592 | 79.3079 | 85.1214 | 1101 | 155 | 1123 | 293 | 93 | 31.7406 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6559 | 97.3475 | 100.0000 | 41.6139 | 1101 | 30 | 1107 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.1339 | 0.0000 | 0.0000 | 1101 | 94 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | * | 90.6795 | 84.1100 | 98.3622 | 53.8256 | 1101 | 208 | 1021 | 17 | 16 | 94.1176 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.1623 | 100.0000 | 1102 | 192 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | homalt | 55.7975 | 49.6173 | 63.7363 | 55.1608 | 1102 | 1119 | 1102 | 627 | 574 | 91.5470 | |