PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65401-65450 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.4946 | 92.1026 | 99.1461 | 40.7199 | 898 | 77 | 1045 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.4973 | 52.5761 | 98.2495 | 47.4411 | 898 | 810 | 898 | 16 | 15 | 93.7500 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8420 | 95.3291 | 98.4036 | 71.9360 | 898 | 44 | 863 | 14 | 8 | 57.1429 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9545 | 92.8719 | 97.1326 | 81.0032 | 899 | 69 | 813 | 24 | 17 | 70.8333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 51.6425 | 35.4076 | 95.3714 | 40.1032 | 899 | 1640 | 886 | 43 | 33 | 76.7442 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1871 | 95.2331 | 99.2231 | 35.3659 | 899 | 45 | 894 | 7 | 7 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 79.1153 | 74.3590 | 84.5216 | 89.5868 | 899 | 310 | 901 | 165 | 39 | 23.6364 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 94.6645 | 94.1361 | 95.1988 | 74.6771 | 899 | 56 | 1269 | 64 | 58 | 90.6250 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 71.5778 | 68.2094 | 75.2961 | 64.2035 | 899 | 419 | 890 | 292 | 290 | 99.3151 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | homalt | 76.5877 | 73.3496 | 80.1248 | 79.4844 | 900 | 327 | 899 | 223 | 196 | 87.8924 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.4626 | 97.6139 | 97.3118 | 72.5745 | 900 | 22 | 905 | 25 | 15 | 60.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9011 | 98.5761 | 99.2282 | 89.6010 | 900 | 13 | 900 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3707 | 95.3390 | 99.4908 | 31.5202 | 900 | 44 | 977 | 5 | 5 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1997 | 98.5761 | 97.8261 | 89.4229 | 900 | 13 | 900 | 20 | 13 | 65.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6139 | 95.3390 | 100.0000 | 30.9052 | 900 | 44 | 977 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.1064 | 76.2066 | 86.6795 | 41.5020 | 900 | 281 | 898 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.9237 | 76.2066 | 86.2632 | 43.6078 | 900 | 281 | 898 | 143 | 143 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | homalt | 86.1695 | 76.9889 | 97.8360 | 44.7799 | 900 | 269 | 859 | 19 | 14 | 73.6842 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5047 | 97.6139 | 97.3958 | 75.5476 | 900 | 22 | 935 | 25 | 7 | 28.0000 | |
| cchapple-custom | SNP | tv | map_l250_m2_e0 | homalt | 97.9858 | 96.0512 | 100.0000 | 85.3349 | 900 | 37 | 900 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | het | 97.7729 | 96.3597 | 99.2282 | 93.4065 | 900 | 34 | 900 | 7 | 1 | 14.2857 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e1 | het | 97.5133 | 97.4026 | 97.6242 | 89.7600 | 900 | 24 | 904 | 22 | 6 | 27.2727 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.0110 | 98.7939 | 99.2291 | 68.2739 | 901 | 11 | 901 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.0630 | 95.6476 | 98.5210 | 73.1357 | 901 | 41 | 866 | 13 | 7 | 53.8462 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3413 | 95.6476 | 99.0960 | 66.2729 | 901 | 41 | 877 | 8 | 1 | 12.5000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 80.1588 | 67.7444 | 98.1441 | 38.0663 | 901 | 429 | 899 | 17 | 16 | 94.1176 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7939 | 98.7939 | 98.7939 | 70.6564 | 901 | 11 | 901 | 11 | 9 | 81.8182 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 80.1595 | 67.7444 | 98.1461 | 38.4977 | 901 | 429 | 900 | 17 | 15 | 88.2353 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9542 | 98.7939 | 99.1150 | 59.1505 | 901 | 11 | 896 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3295 | 95.4449 | 99.2901 | 33.1072 | 901 | 43 | 979 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2837 | 98.7939 | 99.7785 | 64.4068 | 901 | 11 | 901 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | hetalt | 84.1254 | 73.6713 | 98.0371 | 62.0604 | 901 | 322 | 899 | 18 | 17 | 94.4444 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.6390 | 97.8308 | 97.4480 | 69.8833 | 902 | 20 | 1031 | 27 | 12 | 44.4444 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 40.3639 | 25.5814 | 95.6173 | 48.0711 | 902 | 2624 | 1789 | 82 | 81 | 98.7805 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | het | 96.8331 | 96.5739 | 97.0936 | 93.7967 | 902 | 32 | 902 | 27 | 8 | 29.6296 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4715 | 90.0200 | 97.1983 | 64.9943 | 902 | 100 | 902 | 26 | 23 | 88.4615 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2845 | 98.6871 | 99.8893 | 67.1756 | 902 | 12 | 902 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | het | 63.3205 | 46.4948 | 99.2299 | 92.2101 | 902 | 1038 | 902 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7582 | 92.5128 | 99.2395 | 38.0448 | 902 | 73 | 1044 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7289 | 93.1818 | 96.3283 | 76.7629 | 902 | 66 | 892 | 34 | 8 | 23.5294 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e1 | het | 89.8854 | 97.6190 | 83.2872 | 93.5910 | 902 | 22 | 902 | 181 | 52 | 28.7293 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 41.1872 | 0.0000 | 0.0000 | 902 | 1288 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.8308 | 96.2647 | 99.4487 | 89.6177 | 902 | 35 | 902 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.9128 | 37.3964 | 75.0227 | 61.0403 | 902 | 1510 | 826 | 275 | 49 | 17.8182 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6012 | 95.7537 | 99.5214 | 52.8600 | 902 | 40 | 3535 | 17 | 15 | 88.2353 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2285 | 93.2851 | 97.2547 | 53.8987 | 903 | 65 | 3082 | 87 | 61 | 70.1149 | |
| ckim-isaac | INDEL | D6_15 | HG002complexvar | homalt | 84.4830 | 77.2455 | 93.2169 | 48.7355 | 903 | 266 | 907 | 66 | 15 | 22.7273 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.1362 | 91.0282 | 87.3213 | 73.7422 | 903 | 89 | 916 | 133 | 46 | 34.5865 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 55.0595 | 38.1013 | 99.2214 | 43.7774 | 903 | 1467 | 892 | 7 | 6 | 85.7143 | |