PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64251-64300 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4243 | 97.9408 | 91.1515 | 88.7786 | 761 | 16 | 752 | 73 | 34 | 46.5753 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | * | 97.7557 | 97.9434 | 97.5687 | 88.8732 | 762 | 16 | 923 | 23 | 13 | 56.5217 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.9226 | 98.5770 | 79.3467 | 77.1325 | 762 | 11 | 753 | 196 | 156 | 79.5918 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | het | 59.7254 | 89.0187 | 44.9378 | 47.8055 | 762 | 94 | 1336 | 1637 | 1603 | 97.9230 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | het | 87.2472 | 82.4675 | 92.6150 | 93.8423 | 762 | 162 | 765 | 61 | 6 | 9.8361 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 95.4470 | 98.0695 | 92.9612 | 88.8271 | 762 | 15 | 766 | 58 | 3 | 5.1724 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 96.8346 | 98.0695 | 95.6305 | 89.6028 | 762 | 15 | 766 | 35 | 1 | 2.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.8529 | 57.2932 | 96.3338 | 35.0041 | 762 | 568 | 762 | 29 | 27 | 93.1034 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | homalt | 98.7047 | 98.4496 | 98.9610 | 85.2744 | 762 | 12 | 762 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.3799 | 96.2169 | 98.5714 | 78.0188 | 763 | 30 | 759 | 11 | 1 | 9.0909 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.9721 | 88.4125 | 91.5877 | 56.8507 | 763 | 100 | 773 | 71 | 41 | 57.7465 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7006 | 96.2169 | 99.2308 | 24.4186 | 763 | 30 | 774 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | homalt | 98.6425 | 98.5788 | 98.7063 | 87.5222 | 763 | 11 | 763 | 10 | 6 | 60.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7238 | 91.2679 | 98.4516 | 67.1749 | 763 | 73 | 763 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 94.9121 | 99.0909 | 91.0714 | 91.6749 | 763 | 7 | 765 | 75 | 4 | 5.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | * | 98.1350 | 98.0720 | 98.1982 | 88.9000 | 763 | 15 | 763 | 14 | 4 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6390 | 96.2169 | 99.1037 | 24.2483 | 763 | 30 | 774 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e1 | homalt | 98.8342 | 98.5788 | 99.0909 | 86.5970 | 763 | 11 | 763 | 7 | 4 | 57.1429 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 51.6840 | 41.4224 | 68.7044 | 73.6538 | 763 | 1079 | 753 | 343 | 297 | 86.5889 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9502 | 99.0909 | 96.8354 | 87.4264 | 763 | 7 | 765 | 25 | 2 | 8.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5182 | 98.1982 | 98.8402 | 84.7364 | 763 | 14 | 767 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.7719 | 98.1982 | 99.3523 | 82.2488 | 763 | 14 | 767 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 92.0567 | 99.0909 | 85.9551 | 90.9534 | 763 | 7 | 765 | 125 | 5 | 4.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 95.3248 | 98.0720 | 92.7273 | 92.5454 | 763 | 15 | 765 | 60 | 6 | 10.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.8997 | 98.7080 | 99.0921 | 87.0551 | 764 | 10 | 764 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 97.0881 | 98.3269 | 95.8801 | 89.2469 | 764 | 13 | 768 | 33 | 1 | 3.0303 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6130 | 91.3876 | 98.0745 | 66.7520 | 764 | 72 | 764 | 15 | 13 | 86.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 98.3302 | 99.2208 | 97.4555 | 87.7969 | 764 | 6 | 766 | 20 | 3 | 15.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2861 | 98.8357 | 99.7406 | 78.6722 | 764 | 9 | 769 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5836 | 98.3269 | 98.8417 | 84.3252 | 764 | 13 | 768 | 9 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 98.7103 | 98.3269 | 99.0968 | 85.3053 | 764 | 13 | 768 | 7 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6130 | 91.3876 | 98.0745 | 66.7520 | 764 | 72 | 764 | 15 | 13 | 86.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0917 | 98.9651 | 99.2188 | 73.5537 | 765 | 8 | 762 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.3862 | 92.1687 | 96.7130 | 85.8775 | 765 | 65 | 765 | 26 | 19 | 73.0769 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 98.3301 | 98.3290 | 98.3312 | 88.4043 | 765 | 13 | 766 | 13 | 5 | 38.4615 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6752 | 98.9651 | 98.3871 | 77.1459 | 765 | 8 | 854 | 14 | 3 | 21.4286 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.7973 | 53.7975 | 91.6468 | 94.9895 | 765 | 657 | 768 | 70 | 16 | 22.8571 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5825 | 98.4556 | 98.7097 | 83.9478 | 765 | 12 | 765 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2053 | 98.3290 | 98.0818 | 90.2929 | 765 | 13 | 767 | 15 | 4 | 26.6667 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.7194 | 61.1022 | 99.5294 | 32.2169 | 765 | 487 | 846 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.7734 | 98.8372 | 98.7097 | 86.3987 | 765 | 9 | 765 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | homalt | 98.9664 | 98.9664 | 98.9664 | 85.9247 | 766 | 8 | 766 | 8 | 6 | 75.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 68.3405 | 57.5940 | 84.0173 | 50.8840 | 766 | 564 | 1167 | 222 | 125 | 56.3063 | |