PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64101-64150 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 95.3203 | 97.4026 | 93.3251 | 86.4330 | 750 | 20 | 755 | 54 | 4 | 7.4074 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | * | 97.4026 | 98.0392 | 96.7742 | 93.4737 | 750 | 15 | 750 | 25 | 4 | 16.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.4546 | 88.0282 | 99.5940 | 77.7945 | 750 | 102 | 736 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 62.3929 | 45.5428 | 99.0338 | 45.1898 | 751 | 898 | 615 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2204 | 94.5844 | 97.9140 | 85.0487 | 751 | 43 | 751 | 16 | 7 | 43.7500 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | homalt | 98.6859 | 98.4273 | 98.9460 | 85.1526 | 751 | 12 | 751 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8164 | 89.8325 | 98.1699 | 67.2797 | 751 | 85 | 751 | 14 | 12 | 85.7143 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 98.4283 | 98.4273 | 98.4293 | 88.4102 | 751 | 12 | 752 | 12 | 4 | 33.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1058 | 98.2984 | 97.9140 | 86.2050 | 751 | 13 | 751 | 16 | 3 | 18.7500 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 98.3008 | 98.4273 | 98.1747 | 90.2973 | 751 | 12 | 753 | 14 | 3 | 21.4286 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6197 | 95.7908 | 99.5198 | 33.5726 | 751 | 33 | 829 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 85.0321 | 87.0220 | 83.1312 | 60.9052 | 751 | 112 | 754 | 153 | 72 | 47.0588 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5366 | 96.6538 | 96.4198 | 83.9921 | 751 | 26 | 781 | 29 | 8 | 27.5862 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2176 | 94.7037 | 99.8686 | 24.8766 | 751 | 42 | 760 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5990 | 94.8298 | 98.4355 | 90.5728 | 752 | 41 | 755 | 12 | 1 | 8.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.8521 | 85.8447 | 83.8821 | 72.0175 | 752 | 124 | 968 | 186 | 175 | 94.0860 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9157 | 97.2833 | 98.5564 | 70.7710 | 752 | 21 | 751 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | het | 98.2018 | 98.4293 | 97.9753 | 85.2570 | 752 | 12 | 871 | 18 | 5 | 27.7778 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7428 | 78.4150 | 94.5813 | 55.1133 | 752 | 207 | 768 | 44 | 43 | 97.7273 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6192 | 89.9522 | 97.5980 | 66.0369 | 752 | 84 | 772 | 19 | 15 | 78.9474 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 95.0802 | 98.5583 | 91.8392 | 92.3713 | 752 | 11 | 754 | 67 | 5 | 7.4627 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2068 | 83.8350 | 100.0000 | 41.5864 | 752 | 145 | 788 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9827 | 97.6623 | 98.3051 | 85.1328 | 752 | 18 | 754 | 13 | 2 | 15.3846 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 90.9078 | 83.8350 | 99.2840 | 42.0470 | 752 | 145 | 832 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | het | 69.1155 | 80.6210 | 60.4839 | 96.0595 | 753 | 181 | 750 | 490 | 108 | 22.0408 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8466 | 94.9559 | 98.8142 | 35.1282 | 753 | 40 | 750 | 9 | 9 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7528 | 96.0459 | 99.5215 | 32.8514 | 753 | 31 | 832 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2201 | 83.9465 | 99.8737 | 37.5887 | 753 | 144 | 791 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.4407 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | homalt | 96.9786 | 97.2868 | 96.6724 | 87.1688 | 753 | 21 | 1133 | 39 | 35 | 89.7436 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9841 | 96.7866 | 99.2116 | 86.8612 | 753 | 25 | 755 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2727 | 83.9465 | 100.0000 | 42.7114 | 753 | 144 | 786 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 92.9788 | 98.6894 | 87.8929 | 91.6415 | 753 | 10 | 755 | 104 | 4 | 3.8462 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1596 | 94.9559 | 99.4681 | 76.3893 | 753 | 40 | 748 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.9841 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | het | 97.4146 | 97.7922 | 97.0399 | 86.1324 | 753 | 17 | 754 | 23 | 1 | 4.3478 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | het | 96.7924 | 94.9559 | 98.7013 | 83.9181 | 753 | 40 | 760 | 10 | 1 | 10.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 78.8161 | 88.4841 | 71.0526 | 89.1898 | 753 | 98 | 729 | 297 | 73 | 24.5791 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | * | 91.5776 | 96.7866 | 86.9006 | 90.8380 | 753 | 25 | 743 | 112 | 14 | 12.5000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.5076 | 97.4127 | 93.6755 | 70.3048 | 753 | 20 | 1022 | 69 | 54 | 78.2609 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.4823 | 87.7622 | 100.0000 | 53.9683 | 753 | 105 | 754 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2201 | 83.9465 | 99.8737 | 37.5887 | 753 | 144 | 791 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7528 | 96.0459 | 99.5215 | 32.8514 | 753 | 31 | 832 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | homalt | 98.2393 | 97.2868 | 99.2105 | 85.0600 | 753 | 21 | 754 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 95.7815 | 96.7866 | 94.7970 | 87.9805 | 753 | 25 | 747 | 41 | 6 | 14.6341 | |