PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64051-64100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6913 | 98.9362 | 92.6526 | 62.5292 | 744 | 8 | 744 | 59 | 59 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002compoundhet | het | 91.3786 | 87.6471 | 95.4420 | 86.4242 | 745 | 105 | 691 | 33 | 27 | 81.8182 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.1321 | 46.1872 | 82.1586 | 80.3718 | 745 | 868 | 746 | 162 | 24 | 14.8148 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | het | 96.3746 | 97.5131 | 95.2625 | 88.9141 | 745 | 19 | 744 | 37 | 3 | 8.1081 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | het | 95.0971 | 95.8816 | 94.3253 | 83.1025 | 745 | 32 | 748 | 45 | 6 | 13.3333 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.6981 | 52.4613 | 52.9371 | 95.3580 | 746 | 676 | 757 | 673 | 56 | 8.3210 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.0853 | 63.1134 | 95.7692 | 72.6027 | 746 | 436 | 747 | 33 | 30 | 90.9091 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | * | 78.1152 | 64.4771 | 99.0704 | 94.2799 | 746 | 411 | 746 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9023 | 96.8831 | 98.9432 | 78.1087 | 746 | 24 | 749 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.5423 | 89.2344 | 98.2872 | 66.4011 | 746 | 90 | 746 | 13 | 11 | 84.6154 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002compoundhet | het | 90.1398 | 87.7647 | 92.6471 | 86.3079 | 746 | 104 | 693 | 55 | 49 | 89.0909 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.2099 | 99.2021 | 87.9004 | 61.3834 | 746 | 6 | 741 | 102 | 102 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | * | 95.8895 | 95.8869 | 95.8922 | 92.8591 | 746 | 32 | 747 | 32 | 5 | 15.6250 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9668 | 97.6440 | 98.2917 | 85.0197 | 746 | 18 | 748 | 13 | 2 | 15.3846 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0971 | 98.0315 | 98.1627 | 67.6020 | 747 | 15 | 748 | 14 | 7 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 96.5155 | 96.0154 | 97.0207 | 90.1102 | 747 | 31 | 749 | 23 | 5 | 21.7391 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | het | 97.4578 | 97.7749 | 97.1429 | 86.0457 | 747 | 17 | 748 | 22 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.4322 | 96.6365 | 96.2287 | 73.8133 | 747 | 26 | 791 | 31 | 21 | 67.7419 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2959 | 95.2806 | 99.3983 | 32.5487 | 747 | 37 | 826 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5279 | 94.3253 | 98.8357 | 24.3640 | 748 | 45 | 764 | 9 | 8 | 88.8889 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 53.2015 | 46.3732 | 62.3880 | 36.5667 | 748 | 865 | 4039 | 2435 | 1935 | 79.4661 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0756 | 95.4082 | 98.8024 | 34.2002 | 748 | 36 | 825 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.5190 | 96.2677 | 98.8032 | 75.9360 | 748 | 29 | 743 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e1 | * | 95.4657 | 96.1440 | 94.7970 | 88.9775 | 748 | 30 | 747 | 41 | 8 | 19.5122 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 78.8022 | 96.7658 | 66.4639 | 76.6264 | 748 | 25 | 874 | 441 | 259 | 58.7302 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | het | 92.7842 | 87.3832 | 98.8969 | 23.0186 | 748 | 108 | 7531 | 84 | 67 | 79.7619 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0178 | 94.3253 | 99.8684 | 24.7525 | 748 | 45 | 759 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0984 | 98.0341 | 98.1627 | 88.9051 | 748 | 15 | 748 | 14 | 4 | 28.5714 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 89.4737 | 82.0175 | 98.4211 | 51.7154 | 748 | 164 | 748 | 12 | 4 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.3015 | 79.4055 | 89.8409 | 68.3211 | 748 | 194 | 734 | 83 | 52 | 62.6506 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e0 | het | 87.3084 | 82.6711 | 92.4969 | 93.8067 | 749 | 157 | 752 | 61 | 6 | 9.8361 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.8517 | 749 | 858 | 749 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 95.3628 | 98.1651 | 92.7160 | 92.5428 | 749 | 14 | 751 | 59 | 5 | 8.4746 | |
| jmaeng-gatk | SNP | ti | map_l250_m1_e0 | homalt | 63.5823 | 46.6086 | 100.0000 | 92.3540 | 749 | 858 | 749 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3359 | 95.5357 | 99.2053 | 39.4061 | 749 | 35 | 749 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | homalt | 98.9427 | 98.1651 | 99.7326 | 81.6352 | 749 | 14 | 746 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1032 | 98.0366 | 98.1699 | 85.9427 | 749 | 15 | 751 | 14 | 3 | 21.4286 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7169 | 95.5357 | 100.0000 | 32.6547 | 749 | 35 | 827 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.9009 | 749 | 16 | 749 | 16 | 4 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0845 | 94.4515 | 99.8686 | 24.7280 | 749 | 44 | 760 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.4174 | 87.2960 | 98.1771 | 57.2145 | 749 | 109 | 754 | 14 | 4 | 28.5714 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | het | 85.7414 | 98.1675 | 76.1076 | 89.6257 | 750 | 14 | 962 | 302 | 95 | 31.4570 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.5532 | 95.6633 | 99.5192 | 32.7405 | 750 | 34 | 828 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | * | 97.0246 | 98.0392 | 96.0307 | 93.0983 | 750 | 15 | 750 | 31 | 5 | 16.1290 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8495 | 96.4010 | 99.3421 | 82.5287 | 750 | 28 | 755 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | het | 97.6562 | 97.4026 | 97.9112 | 85.4539 | 750 | 20 | 750 | 16 | 4 | 25.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |