PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63951-64000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.1512 | 96.0630 | 98.2644 | 67.2067 | 732 | 30 | 736 | 13 | 8 | 61.5385 | |
| asubramanian-gatk | SNP | tv | map_l150_m0_e0 | * | 29.8574 | 17.5611 | 99.5924 | 97.2219 | 733 | 3441 | 733 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | * | 96.0079 | 96.0682 | 95.9477 | 92.8545 | 733 | 30 | 734 | 31 | 4 | 12.9032 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | homalt | 97.0861 | 96.0682 | 98.1258 | 89.6192 | 733 | 30 | 733 | 14 | 9 | 64.2857 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.4338 | 0.0000 | 0.0000 | 733 | 60 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2825 | 96.1942 | 98.3957 | 66.2911 | 733 | 29 | 736 | 12 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 89.8860 | 81.7168 | 99.8700 | 38.3320 | 733 | 164 | 768 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | * | 95.5016 | 96.0682 | 94.9416 | 89.0312 | 733 | 30 | 732 | 39 | 8 | 20.5128 | |
| gduggal-snapplat | SNP | tv | map_l250_m2_e1 | homalt | 87.3139 | 77.4841 | 100.0000 | 90.2591 | 733 | 213 | 733 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 84.0543 | 76.5381 | 93.2075 | 68.0466 | 734 | 225 | 741 | 54 | 46 | 85.1852 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | * | 96.6463 | 96.1992 | 97.0976 | 90.1019 | 734 | 29 | 736 | 22 | 4 | 18.1818 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4121 | 96.3255 | 98.5235 | 67.0062 | 734 | 28 | 734 | 11 | 7 | 63.6364 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | * | 95.6975 | 95.9477 | 95.4486 | 93.6441 | 734 | 31 | 734 | 35 | 5 | 14.2857 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 40.7441 | 38.0238 | 43.8836 | 68.6231 | 735 | 1198 | 739 | 945 | 935 | 98.9418 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 47.3830 | 86.3690 | 32.6467 | 86.8151 | 735 | 116 | 729 | 1504 | 49 | 3.2580 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7394 | 96.4567 | 99.0566 | 64.0330 | 735 | 27 | 735 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | het | 88.2507 | 86.4706 | 90.1055 | 86.0431 | 735 | 115 | 683 | 75 | 74 | 98.6667 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | * | 77.9841 | 64.3045 | 99.0566 | 94.2525 | 735 | 408 | 735 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9204 | 87.9187 | 98.5255 | 66.5471 | 735 | 101 | 735 | 11 | 9 | 81.8182 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | het | 97.6108 | 96.2042 | 99.0591 | 83.7802 | 735 | 29 | 737 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.8400 | 87.9187 | 96.1276 | 66.5396 | 735 | 101 | 844 | 34 | 30 | 88.2353 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | * | 96.8421 | 96.2092 | 97.4834 | 91.8033 | 736 | 29 | 736 | 19 | 14 | 73.6842 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | * | 90.3067 | 96.2092 | 85.0867 | 94.8490 | 736 | 29 | 736 | 129 | 12 | 9.3023 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.6513 | 93.6387 | 99.8643 | 55.3874 | 736 | 50 | 736 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | het | 95.6493 | 95.5844 | 95.7143 | 92.3154 | 736 | 34 | 737 | 33 | 3 | 9.0909 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8741 | 96.4613 | 99.3289 | 82.5609 | 736 | 27 | 740 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4189 | 97.8723 | 96.9697 | 59.4335 | 736 | 16 | 736 | 23 | 23 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.8121 | 88.0383 | 98.1333 | 66.6073 | 736 | 100 | 736 | 14 | 12 | 85.7143 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.8949 | 85.2839 | 88.5680 | 60.6534 | 736 | 127 | 736 | 95 | 92 | 96.8421 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | * | 83.6982 | 96.2092 | 74.0666 | 94.7166 | 736 | 29 | 734 | 257 | 5 | 1.9455 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | het | 54.4177 | 37.4555 | 99.4595 | 98.0055 | 736 | 1229 | 736 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5955 | 94.8520 | 98.4043 | 89.8378 | 737 | 40 | 740 | 12 | 1 | 8.3333 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 34.4736 | 24.7232 | 56.9231 | 34.0999 | 737 | 2244 | 1517 | 1148 | 971 | 84.5819 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6016 | 96.7192 | 96.4844 | 63.4807 | 737 | 25 | 741 | 27 | 4 | 14.8148 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.9542 | 96.7192 | 97.1903 | 68.5416 | 737 | 25 | 761 | 22 | 7 | 31.8182 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | het | 91.6005 | 86.8235 | 96.9338 | 46.2155 | 738 | 112 | 6702 | 212 | 180 | 84.9057 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | het | 96.7920 | 94.9807 | 98.6737 | 82.4610 | 738 | 39 | 744 | 10 | 1 | 10.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | het | 95.1644 | 96.5969 | 93.7738 | 84.6289 | 738 | 26 | 738 | 49 | 6 | 12.2449 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.7126 | 30.6097 | 42.8571 | 50.7598 | 738 | 1673 | 861 | 1148 | 864 | 75.2613 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 94.7368 | 95.8442 | 93.6548 | 88.7251 | 738 | 32 | 738 | 50 | 27 | 54.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.2316 | 94.9807 | 99.5918 | 74.1652 | 738 | 39 | 732 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.0436 | 94.8586 | 99.3316 | 83.4403 | 738 | 40 | 743 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 93.9573 | 93.1904 | 94.7368 | 87.3601 | 739 | 54 | 738 | 41 | 29 | 70.7317 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8808 | 96.9816 | 98.7968 | 67.2217 | 739 | 23 | 739 | 9 | 5 | 55.5556 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 70.4260 | 57.0216 | 92.0694 | 94.2733 | 739 | 557 | 743 | 64 | 15 | 23.4375 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | * | 97.8160 | 96.6013 | 99.0617 | 92.0849 | 739 | 26 | 739 | 7 | 3 | 42.8571 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | * | 97.1091 | 96.6013 | 97.6222 | 91.9886 | 739 | 26 | 739 | 18 | 2 | 11.1111 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 95.7666 | 96.8545 | 94.7028 | 87.9645 | 739 | 24 | 733 | 41 | 6 | 14.6341 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | * | 64.8581 | 52.4858 | 84.8624 | 85.1067 | 739 | 669 | 740 | 132 | 104 | 78.7879 | |