PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63651-63700 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 73.2802 | 81.7861 | 66.3768 | 81.5483 | 696 | 155 | 916 | 464 | 182 | 39.2241 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2867 | 99.0043 | 99.5708 | 47.6796 | 696 | 7 | 696 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.4839 | 96.0055 | 99.0085 | 82.7426 | 697 | 29 | 699 | 7 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 88.1449 | 83.3732 | 93.4959 | 66.1468 | 697 | 139 | 690 | 48 | 38 | 79.1667 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | * | 48.6337 | 42.4224 | 56.9758 | 58.5526 | 697 | 946 | 682 | 515 | 432 | 83.8835 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2429 | 94.0621 | 98.5272 | 72.0921 | 697 | 44 | 669 | 10 | 8 | 80.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.3468 | 95.0887 | 99.7147 | 63.4324 | 697 | 36 | 699 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | HG002complexvar | hetalt | 66.7172 | 51.5533 | 94.5191 | 75.2098 | 697 | 655 | 1759 | 102 | 101 | 99.0196 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m1_e0 | het | 95.7449 | 96.0055 | 95.4856 | 91.8049 | 697 | 29 | 698 | 33 | 3 | 9.0909 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 97.7583 | 97.2106 | 98.3122 | 87.0161 | 697 | 20 | 699 | 12 | 3 | 25.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m1_e0 | * | 97.2822 | 97.3501 | 97.2145 | 88.4436 | 698 | 19 | 698 | 20 | 2 | 10.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.1443 | 80.8806 | 99.2888 | 68.7833 | 698 | 165 | 698 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | * | 96.9396 | 97.3501 | 96.5326 | 89.6646 | 698 | 19 | 696 | 25 | 3 | 12.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.6138 | 97.3501 | 83.0166 | 59.0666 | 698 | 19 | 699 | 143 | 81 | 56.6434 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8276 | 97.3501 | 98.3099 | 87.6436 | 698 | 19 | 698 | 12 | 5 | 41.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | * | 95.2899 | 91.2418 | 99.7139 | 86.9370 | 698 | 67 | 697 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 35.3991 | 698 | 5 | 688 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 46.4313 | 698 | 5 | 698 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 94.2709 | 89.9614 | 99.0141 | 85.8566 | 699 | 78 | 703 | 7 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7147 | 99.4310 | 100.0000 | 46.1064 | 699 | 4 | 699 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.0120 | 55.2569 | 91.8848 | 94.6637 | 699 | 566 | 702 | 62 | 14 | 22.5806 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.3244 | 88.0353 | 99.2898 | 87.3699 | 699 | 95 | 699 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0787 | 99.4310 | 98.7288 | 45.5803 | 699 | 4 | 699 | 9 | 9 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4310 | 99.4310 | 99.4310 | 47.4196 | 699 | 4 | 699 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 48.9503 | 37.9479 | 68.9379 | 70.3682 | 699 | 1143 | 688 | 310 | 289 | 93.2258 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6436 | 99.4310 | 99.8571 | 47.4080 | 699 | 4 | 699 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7862 | 99.5733 | 100.0000 | 46.7275 | 700 | 3 | 700 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7862 | 99.5733 | 100.0000 | 36.3469 | 700 | 3 | 690 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 46.9743 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 47.3724 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.4933 | 95.4980 | 99.5739 | 64.9402 | 700 | 33 | 701 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9153 | 96.4187 | 93.4579 | 83.5312 | 700 | 26 | 700 | 49 | 6 | 12.2449 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.1311 | 88.2872 | 47.9310 | 90.8828 | 701 | 93 | 695 | 755 | 39 | 5.1656 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8418 | 96.6942 | 99.0169 | 76.5404 | 702 | 24 | 705 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.1466 | 70.0599 | 90.9416 | 60.7394 | 702 | 300 | 763 | 76 | 70 | 92.1053 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.6000 | 88.4131 | 99.4334 | 87.7068 | 702 | 92 | 702 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | * | 97.6949 | 97.9079 | 97.4828 | 88.4422 | 702 | 15 | 852 | 22 | 12 | 54.5455 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | homalt | 96.9613 | 95.9016 | 98.0447 | 89.0553 | 702 | 30 | 702 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| asubramanian-gatk | INDEL | * | map_l150_m1_e0 | het | 86.9483 | 82.1053 | 92.3984 | 93.4997 | 702 | 153 | 705 | 58 | 6 | 10.3448 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.4183 | 93.3511 | 95.5102 | 59.6597 | 702 | 50 | 702 | 33 | 22 | 66.6667 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9763 | 97.9079 | 98.0447 | 88.3293 | 702 | 15 | 702 | 14 | 4 | 28.5714 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | het | 35.4961 | 21.6042 | 99.4342 | 98.4524 | 703 | 2551 | 703 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.8287 | 33.0357 | 39.1376 | 73.2950 | 703 | 1425 | 708 | 1101 | 1085 | 98.5468 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3714 | 93.4840 | 99.4429 | 53.4069 | 703 | 49 | 714 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 77.5652 | 94.8718 | 65.5987 | 55.1946 | 703 | 38 | 778 | 408 | 397 | 97.3039 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 39.3470 | 36.3683 | 42.8571 | 67.0539 | 703 | 1230 | 705 | 940 | 934 | 99.3617 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | * | 95.1391 | 98.0474 | 92.3984 | 92.1292 | 703 | 14 | 705 | 58 | 5 | 8.6207 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.3721 | 98.1869 | 96.5706 | 61.2646 | 704 | 13 | 704 | 25 | 22 | 88.0000 | |