PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63151-63200 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | het | 20.5402 | 73.6471 | 11.9344 | 70.4320 | 626 | 224 | 691 | 5099 | 5074 | 99.5097 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.7416 | 96.3077 | 99.2188 | 22.9844 | 626 | 24 | 635 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.2050 | 96.4561 | 97.9656 | 65.7923 | 626 | 23 | 626 | 13 | 12 | 92.3077 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.2852 | 94.9924 | 99.6914 | 70.8502 | 626 | 33 | 646 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.2852 | 94.9924 | 99.6914 | 70.8502 | 626 | 33 | 646 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.3286 | 85.3061 | 87.3759 | 57.5045 | 627 | 108 | 616 | 89 | 86 | 96.6292 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.8213 | 96.4615 | 99.2200 | 21.9245 | 627 | 23 | 636 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 73.5605 | 66.5605 | 82.2059 | 36.1952 | 627 | 315 | 2236 | 484 | 477 | 98.5537 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.8966 | 96.4615 | 99.3750 | 22.2357 | 627 | 23 | 636 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 87.2148 | 79.0668 | 97.2350 | 90.0428 | 627 | 166 | 633 | 18 | 2 | 11.1111 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3654 | 95.1442 | 99.6928 | 71.1308 | 627 | 32 | 649 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3654 | 95.1442 | 99.6928 | 71.1308 | 627 | 32 | 649 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.8966 | 96.4615 | 99.3750 | 22.2357 | 627 | 23 | 636 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.9009 | 96.6154 | 99.2212 | 23.1138 | 628 | 22 | 637 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.1064 | 82.4147 | 65.6873 | 70.7937 | 628 | 134 | 626 | 327 | 81 | 24.7706 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7936 | 91.4119 | 98.4351 | 78.0939 | 628 | 59 | 629 | 10 | 5 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.0043 | 94.4361 | 89.6947 | 85.2186 | 628 | 37 | 470 | 54 | 47 | 87.0370 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.6710 | 96.6154 | 98.7500 | 34.0206 | 628 | 22 | 632 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.9992 | 84.8853 | 65.5879 | 54.1770 | 629 | 112 | 608 | 319 | 304 | 95.2978 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1476 | 94.4444 | 97.9133 | 88.6665 | 629 | 37 | 610 | 13 | 3 | 23.0769 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1476 | 94.4444 | 97.9133 | 88.6665 | 629 | 37 | 610 | 13 | 3 | 23.0769 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3394 | 95.0151 | 97.7011 | 78.9127 | 629 | 33 | 595 | 14 | 7 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 77.3981 | 72.8853 | 82.5065 | 89.4982 | 629 | 234 | 632 | 134 | 63 | 47.0149 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | het | 89.1566 | 80.9524 | 99.2114 | 85.2042 | 629 | 148 | 629 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.4669 | 80.2296 | 98.5893 | 38.6538 | 629 | 155 | 629 | 9 | 8 | 88.8889 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.4677 | 94.4444 | 96.5135 | 88.1879 | 629 | 37 | 609 | 22 | 5 | 22.7273 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.1557 | 94.5865 | 89.8467 | 85.0129 | 629 | 36 | 469 | 53 | 47 | 88.6792 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.4677 | 94.4444 | 96.5135 | 88.1879 | 629 | 37 | 609 | 22 | 5 | 22.7273 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.0558 | 96.7692 | 99.3769 | 23.2975 | 629 | 21 | 638 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 54.2716 | 87.3611 | 39.3624 | 86.5975 | 629 | 91 | 605 | 932 | 37 | 3.9700 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | het | 85.2845 | 82.4607 | 88.3085 | 93.5494 | 630 | 134 | 710 | 94 | 20 | 21.2766 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.0119 | 76.3636 | 93.3628 | 58.1998 | 630 | 195 | 633 | 45 | 38 | 84.4444 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.0119 | 76.3636 | 93.3628 | 58.1998 | 630 | 195 | 633 | 45 | 38 | 84.4444 | |
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.3185 | 47.4398 | 99.8415 | 86.2587 | 630 | 698 | 630 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8948 | 95.1662 | 96.6346 | 75.0898 | 630 | 32 | 603 | 21 | 15 | 71.4286 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7383 | 91.7031 | 97.9814 | 80.1296 | 630 | 57 | 631 | 13 | 8 | 61.5385 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | * | 69.1865 | 57.9044 | 85.9290 | 78.9897 | 630 | 458 | 629 | 103 | 90 | 87.3786 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.0456 | 65.5567 | 55.3892 | 58.1977 | 630 | 331 | 740 | 596 | 423 | 70.9732 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 89.7485 | 86.7769 | 92.9308 | 90.5838 | 630 | 96 | 631 | 48 | 4 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7581 | 95.3172 | 98.2432 | 76.2972 | 631 | 31 | 727 | 13 | 8 | 61.5385 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.4358 | 82.8084 | 88.2353 | 65.4739 | 631 | 131 | 630 | 84 | 79 | 94.0476 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 55.8407 | 0.0000 | 0.0000 | 631 | 499 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | het | 52.1057 | 35.3106 | 99.3701 | 97.9946 | 631 | 1156 | 631 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.0414 | 91.8486 | 96.3415 | 81.8634 | 631 | 56 | 632 | 24 | 14 | 58.3333 | |