PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62951-63000 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5845 | 96.1905 | 99.0196 | 62.5917 | 606 | 24 | 606 | 6 | 4 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.4258 | 99.1817 | 99.6711 | 84.0629 | 606 | 5 | 606 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3574 | 99.5074 | 95.2984 | 84.1819 | 606 | 3 | 527 | 26 | 22 | 84.6154 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 84.1571 | 606 | 5 | 606 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.2310 | 86.9440 | 98.2026 | 35.7143 | 606 | 91 | 601 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | homalt | 97.8208 | 96.3434 | 99.3443 | 91.6882 | 606 | 23 | 606 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5033 | 96.1905 | 98.8525 | 65.9408 | 606 | 24 | 603 | 7 | 6 | 85.7143 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8208 | 99.5074 | 94.2755 | 84.0377 | 606 | 3 | 527 | 32 | 22 | 68.7500 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 84.1571 | 606 | 5 | 606 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.6957 | 97.7419 | 99.6683 | 80.5358 | 606 | 14 | 601 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | het | 33.8831 | 20.4178 | 99.5074 | 98.4836 | 606 | 2362 | 606 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8262 | 99.5074 | 94.2857 | 83.6449 | 606 | 3 | 528 | 32 | 23 | 71.8750 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.1826 | 99.5074 | 94.9640 | 83.8841 | 606 | 3 | 528 | 28 | 21 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | het | 65.7371 | 54.8329 | 82.0546 | 48.1457 | 607 | 500 | 631 | 138 | 95 | 68.8406 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.8603 | 97.9032 | 99.8363 | 77.0646 | 607 | 13 | 610 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.3819 | 51.3536 | 97.9554 | 43.6649 | 607 | 575 | 527 | 11 | 5 | 45.4545 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.5170 | 91.6918 | 91.3428 | 68.3622 | 607 | 55 | 1034 | 98 | 77 | 78.5714 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6512 | 96.3492 | 96.9551 | 67.3640 | 607 | 23 | 605 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6735 | 92.3896 | 97.0732 | 71.9306 | 607 | 50 | 597 | 18 | 6 | 33.3333 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2641 | 99.3453 | 99.1830 | 83.4862 | 607 | 4 | 607 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.4202 | 96.3492 | 96.4912 | 68.0265 | 607 | 23 | 605 | 22 | 7 | 31.8182 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5087 | 99.3453 | 99.6727 | 80.7741 | 607 | 4 | 609 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 37.4436 | 44.5341 | 32.3009 | 86.3021 | 607 | 756 | 657 | 1377 | 32 | 2.3239 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5100 | 96.3492 | 98.6992 | 65.8143 | 607 | 23 | 607 | 8 | 5 | 62.5000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4329 | 96.3492 | 98.5413 | 62.2630 | 607 | 23 | 608 | 9 | 8 | 88.8889 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 80.5937 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 81.4067 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9102 | 91.6918 | 92.1296 | 76.9886 | 607 | 55 | 597 | 51 | 42 | 82.3529 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8153 | 96.5079 | 97.1246 | 67.5311 | 608 | 22 | 608 | 18 | 14 | 77.7778 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6725 | 96.5079 | 98.8655 | 65.2198 | 608 | 22 | 610 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3579 | 94.8518 | 100.0000 | 40.3320 | 608 | 33 | 611 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4359 | 96.5079 | 98.3819 | 65.6476 | 608 | 22 | 608 | 10 | 7 | 70.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5090 | 99.5090 | 99.5090 | 83.7888 | 608 | 3 | 608 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6707 | 96.5079 | 98.8618 | 65.9091 | 608 | 22 | 608 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 83.7116 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 81.7529 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5140 | 96.5079 | 98.5413 | 64.5402 | 608 | 22 | 608 | 9 | 4 | 44.4444 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.4625 | 98.0645 | 98.8636 | 87.2332 | 608 | 12 | 609 | 7 | 5 | 71.4286 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 35.8000 | 22.6696 | 85.0767 | 69.9119 | 608 | 2074 | 610 | 107 | 84 | 78.5047 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 74.7226 | 73.9078 | 75.5556 | 71.1230 | 609 | 215 | 612 | 198 | 191 | 96.4646 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.2881 | 95.0078 | 99.6805 | 52.4677 | 609 | 32 | 624 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.9260 | 45.7207 | 82.8571 | 79.6003 | 609 | 723 | 609 | 126 | 21 | 16.6667 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 86.8330 | 79.0909 | 96.2552 | 92.7907 | 609 | 161 | 694 | 27 | 21 | 77.7778 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | * | 82.6884 | 71.0618 | 98.8636 | 87.6156 | 609 | 248 | 609 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |