PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1238 1239 1240 1241 1242 1243 1244 1245 1246 ... 1720 1721 » 62051-62100 / 86044 show all
ckim-isaac	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	84.9987	79.7856	90.9408	61.8351	521	132	522	52	45	86.5385
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	57.3427	40.2628	99.5902	49.2196	521	773	486	2	2	100.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
dgrover-gatk	INDEL	I1_5	map_l150_m2_e1	*	98.4930	98.3051	98.6817	90.9679	522	9	524	7	2	28.5714
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	89.6574	81.4353	99.7264	37.3608	522	119	729	2	2	100.0000
ghariani-varprowl	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.2067	99.6183	94.9091	73.8841	522	2	522	28	19	67.8571
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	92.7176	99.4286	86.8552	76.5326	522	3	522	79	2	2.5317
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	66.9401	522	2	522	2	1	50.0000
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	63.0465	522	2	522	2	1	50.0000
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	64.2271	522	2	522	1	1	100.0000
jpowers-varprowl	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3100	99.6183	93.2143	76.1499	522	2	522	38	20	52.6316
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.8781	99.0512	92.9019	82.4220	522	5	445	34	34	100.0000
jlack-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	63.4198	522	2	522	0	0
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	69.2308	522	2	522	2	1	50.0000
hfeng-pmm3	INDEL	I1_5	map_l150_m2_e1	*	98.4006	98.3051	98.4962	88.9741	522	9	524	8	2	25.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	66.4313	522	2	522	1	1	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.7701	97.5701	100.0000	73.5650	522	13	525	0	0
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.2551	91.4186	54.4569	32.9265	522	49	2963	2478	2470	99.6772
eyeh-varpipe	INDEL	I1_5	map_l100_m2_e0	homalt	97.3779	98.3051	96.4680	82.5231	522	9	874	32	29	90.6250
cchapple-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7125	99.6183	99.8069	55.4600	522	2	517	1	1	100.0000
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	93.4194	99.4286	88.0952	73.9938	522	3	518	70	10	14.2857
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6255	99.2410	98.0176	83.6632	523	4	445	9	9	100.0000
ckim-gatk	INDEL	I1_5	map_l150_m2_e1	*	97.0398	98.4934	95.6284	92.9688	523	8	525	24	3	12.5000
ckim-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.1781	523	1	523	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6161	523	2	523	0	0
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	63.7883	523	2	520	0	0
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	69.3435	523	2	523	0	0
ndellapenna-hhga	INDEL	I1_5	map_l150_m2_e1	*	98.6792	98.4934	98.8658	90.1251	523	8	523	6	1	16.6667
ndellapenna-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6190	99.6190	99.6190	68.6754	523	2	523	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	map_l100_m0_e0	*	97.5715	96.3168	98.8593	76.8994	523	20	520	6	1	16.6667
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.4942	523	1	523	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
egarrison-hhga	INDEL	I1_5	map_l150_m2_e1	*	98.4008	98.4934	98.3083	90.5304	523	8	523	9	2	22.2222
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.6961	523	2	523	0	0
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	72.5970	78.6466	67.4115	73.7023	523	142	362	175	146	83.4286
astatham-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.2026	523	1	523	0	0
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.4953	523	2	523	0	0
astatham-gatk	INDEL	I1_5	map_l100_m0_e0	*	97.3957	96.3168	98.4991	85.7449	523	20	525	8	3	37.5000
bgallagher-sentieon	INDEL	I1_5	map_l150_m2_e1	*	98.4039	98.4934	98.3146	90.3068	523	8	525	9	2	22.2222
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.1043	523	1	523	0	0
anovak-vg	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	13.6768	0.0000	0.0000	523	3301	0	0	0
gduggal-bwaplat	INDEL	D1_5	map_l125_m2_e1	het	80.4615	67.9221	98.6792	94.7881	523	247	523	7	1	14.2857
gduggal-bwafb	INDEL	I1_5	map_l100_m0_e0	*	97.3901	96.3168	98.4877	84.2137	523	20	521	8	2	25.0000
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.5100	99.6190	99.4012	66.6667	523	2	498	3	0	0.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	65.9727	523	1	523	0	0
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.0596	99.8095	98.3209	76.9759	524	1	527	9	6	66.6667
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9047	99.8095	100.0000	67.8528	524	1	524	0	0
jli-custom	INDEL	I1_5	map_l150_m2_e1	*	98.8688	98.6817	99.0566	89.1616	524	7	525	5	2	40.0000
ckim-isaac	INDEL	I1_5	segdup	het	97.7612	97.3978	98.1273	94.4800	524	14	524	10	6	60.0000
ckim-vqsr	SNP	ti	map_l250_m0_e0	*	55.0131	38.2482	97.9439	98.4056	524	846	524	11	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge