PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61901-61950 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5224 | 99.2218 | 95.8801 | 89.6170 | 510 | 4 | 512 | 22 | 2 | 9.0909 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6077 | 95.3271 | 100.0000 | 72.7898 | 510 | 25 | 514 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 68.6099 | 52.3077 | 99.6743 | 49.0879 | 510 | 465 | 612 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.7012 | 83.4697 | 48.9383 | 56.4509 | 510 | 101 | 484 | 505 | 504 | 99.8020 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.8953 | 99.2218 | 96.6038 | 89.9048 | 510 | 4 | 512 | 18 | 3 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.8187 | 77.3900 | 98.8636 | 65.8694 | 510 | 149 | 522 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.9860 | 97.7011 | 98.2726 | 88.3079 | 510 | 12 | 512 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7011 | 97.7011 | 97.7011 | 88.5827 | 510 | 12 | 510 | 12 | 2 | 16.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | het | 97.0504 | 97.7011 | 96.4083 | 88.1443 | 510 | 12 | 510 | 19 | 1 | 5.2632 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 74.3814 | 59.9765 | 97.8927 | 91.3619 | 511 | 341 | 511 | 11 | 10 | 90.9091 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 46.7905 | 38.6828 | 59.1981 | 64.3248 | 511 | 810 | 502 | 346 | 329 | 95.0867 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3671 | 98.4586 | 98.2759 | 90.2666 | 511 | 8 | 513 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5262 | 96.9639 | 94.1304 | 83.3091 | 511 | 16 | 433 | 27 | 27 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 43.5514 | 40.6847 | 46.8526 | 86.1967 | 511 | 745 | 588 | 667 | 17 | 2.5487 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 58.8404 | 78.7365 | 46.9711 | 49.1951 | 511 | 138 | 504 | 569 | 529 | 92.9701 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.9726 | 98.4586 | 95.5307 | 92.9472 | 511 | 8 | 513 | 24 | 3 | 12.5000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8091 | 96.9639 | 87.1747 | 63.5912 | 511 | 16 | 1407 | 207 | 89 | 42.9952 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7011 | 96.2335 | 99.2141 | 86.1081 | 511 | 20 | 505 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.6486 | 98.4586 | 98.8395 | 90.0500 | 511 | 8 | 511 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3638 | 98.4586 | 98.2692 | 90.4535 | 511 | 8 | 511 | 9 | 2 | 22.2222 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 70.8686 | 77.1903 | 65.5039 | 70.0927 | 511 | 151 | 507 | 267 | 258 | 96.6292 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.5191 | 96.2335 | 98.8395 | 76.2735 | 511 | 20 | 511 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.1229 | 95.5140 | 98.7868 | 83.6312 | 511 | 24 | 570 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | het | 91.4882 | 95.1673 | 88.0829 | 95.5527 | 512 | 26 | 510 | 69 | 56 | 81.1594 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 98.8426 | 98.6513 | 99.0347 | 89.1016 | 512 | 7 | 513 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.8406 | 98.8417 | 98.8395 | 79.6936 | 512 | 6 | 511 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.9057 | 90.7801 | 60.9122 | 43.2513 | 512 | 52 | 1616 | 1037 | 988 | 95.2748 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4649 | 98.6513 | 98.2792 | 90.3452 | 512 | 7 | 514 | 9 | 2 | 22.2222 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2503 | 95.7009 | 98.8506 | 74.0943 | 512 | 23 | 516 | 6 | 6 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.4360 | 81.0127 | 99.8141 | 38.0184 | 512 | 120 | 537 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | het | 84.1666 | 98.0843 | 73.7079 | 91.1768 | 512 | 10 | 656 | 234 | 53 | 22.6496 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 90.6644 | 83.7971 | 98.7578 | 79.4118 | 512 | 99 | 636 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.1304 | 99.0347 | 99.2263 | 80.8802 | 513 | 5 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3216 | 99.0347 | 99.6101 | 75.9719 | 513 | 5 | 511 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.1319 | 69.2308 | 95.1076 | 60.6014 | 513 | 228 | 486 | 25 | 9 | 36.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | * | 93.4216 | 94.4751 | 92.3913 | 87.7849 | 513 | 30 | 510 | 42 | 14 | 33.3333 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| ckim-isaac | SNP | ti | map_l250_m0_e0 | het | 70.8075 | 54.9251 | 99.6117 | 94.7975 | 513 | 421 | 513 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 97.1634 | 96.6102 | 97.7230 | 88.7825 | 513 | 18 | 515 | 12 | 1 | 8.3333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0552 | 97.3435 | 78.7338 | 77.6244 | 513 | 14 | 485 | 131 | 131 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3237 | 99.2278 | 99.4197 | 79.1700 | 514 | 4 | 514 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e1 | het | 98.0041 | 98.4674 | 97.5450 | 87.6065 | 514 | 8 | 596 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7503 | 97.5332 | 97.9684 | 78.6403 | 514 | 13 | 434 | 9 | 9 | 100.0000 | |