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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1201 1202 1203 1204 1205 1206 1207 1208 1209 ... 1720 1721 » 60201-60250 / 86044 show all
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	82.5868	380	3	380	1	1	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.3182	97.9381	98.7013	74.2475	380	8	380	5	1	20.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4783	380	3	380	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.9523	95.2381	92.7007	57.3209	380	19	381	30	18	60.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	4.6943	0.0000	0.0000	380	7715	0	0	0
gduggal-snapfb	INDEL	D6_15	HG002compoundhet	het	60.7617	44.3925	96.2540	19.2156	380	476	5730	223	211	94.6188
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	60.5363	43.5780	99.1018	34.3811	380	492	331	3	2	66.6667
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.9599	92.4574	99.7382	69.8024	380	31	381	1	1	100.0000
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	42.4175	33.3041	58.3975	75.7745	380	761	379	270	267	98.8889
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4206	380	3	380	0	0
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6506	91.7874	97.6982	73.9680	380	34	382	9	9	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4764	99.2167	99.7375	83.4131	380	3	380	1	1	100.0000
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	41.7184	27.7293	84.1930	71.7265	381	993	1518	285	107	37.5439
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6645	92.0290	97.4555	73.3740	381	33	383	10	10	100.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	82.6739	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.7872	381	2	381	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6078	99.4778	99.7382	83.1048	381	2	381	1	1	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	60.4235	77.7551	49.4100	70.5217	381	109	335	343	340	99.1254
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.6645	92.0290	97.4555	73.3740	381	33	383	10	10	100.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	83.1419	76.6600	90.8213	72.4184	381	116	376	38	25	65.7895
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	91.7019	85.8108	98.4615	77.2063	381	63	384	6	5	83.3333
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.4564	381	2	381	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	66.8212	95.0125	51.5313	71.7775	381	20	387	364	344	94.5055
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.9406	86.2302	91.8269	26.6314	382	61	382	34	33	97.0588
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	92.9440	0.0000	0.0000	382	29	0	0	0
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	60.0572	82.6840	47.1535	44.1989	382	80	381	427	422	98.8290
gduggal-bwafb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	83.6326	78.2787	89.7727	73.4807	382	106	474	54	50	92.5926
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.7080	98.4536	98.9637	75.6774	382	6	382	4	1	25.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.2656	92.2705	98.4615	70.0920	382	32	384	6	4	66.6667
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	85.8671	76.8612	97.2637	69.0054	382	115	391	11	10	90.9091
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	62.3092	51.9728	77.7778	57.5400	382	353	392	112	106	94.6429
ckim-vqsr	SNP	ti	map_l250_m2_e0	homalt	35.8517	21.8411	100.0000	96.8007	382	1367	382	0	0
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	62.0743	45.0588	99.7382	47.8142	383	467	381	1	1	100.0000
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	19.2653	18.2294	20.4260	59.9344	383	1718	374	1457	1446	99.2450
gduggal-snapplat	INDEL	D1_5	map_l125_m0_e0	*	83.1468	77.2177	90.0621	94.3416	383	113	435	48	13	27.0833
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	96.4362	95.5112	97.3793	65.7857	383	18	706	19	18	94.7368
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	97.3133	95.5112	99.1848	77.7374	383	18	365	3	3	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	95.3941	92.5121	98.4615	73.8956	383	31	384	6	5	83.3333
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.9225	92.5121	97.4619	73.8553	383	31	384	10	8	80.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	82.9391	77.0624	89.7862	73.3037	383	114	378	43	27	62.7907
mlin-fermikit	INDEL	D1_5	map_l150_m1_e0	*	65.6309	53.5565	84.7345	81.1195	384	333	383	69	61	88.4058
qzeng-custom	INDEL	I1_5	map_l100_m2_e0	homalt	82.9231	72.3164	97.1761	79.6553	384	147	585	17	3	17.6471
rpoplin-dv42	INDEL	D16_PLUS	HG002compoundhet	het	71.2910	94.8148	57.1195	50.0000	384	21	349	262	262	100.0000
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	16.5768	23.8066	12.7153	80.3047	384	1229	406	2787	32	1.1482
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	37.9373	39.6694	36.3501	63.2242	384	584	976	1709	1112	65.0673
dgrover-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2248	98.9691	99.4819	76.1286	384	4	384	2	1	50.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	90.2590	88.0734	92.5558	81.8305	384	52	373	30	15	50.0000

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