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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1195 1196 1197 1198 1199 1200 1201 1202 1203 ... 1720 1721 » 59901-59950 / 86044 show all
jli-custom	INDEL	D1_5	segdup	homalt	99.8609	100.0000	99.7222	94.3074	359	0	359	1	1	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	61.2420	360	1	360	2	1	50.0000
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	16.8236	10.3093	45.7020	62.4933	360	3132	319	379	351	92.6121
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	20.3275	0.0000	0.0000	360	1411	0	0	0
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	77.9560	93.5065	66.8403	62.4021	360	25	385	191	169	88.4817
dgrover-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.1736	98.9011	99.4475	86.3961	360	4	360	2	2	100.0000
gduggal-snapvard	INDEL	D16_PLUS	*	het	17.6734	11.3960	39.3474	71.0797	360	2799	410	632	372	58.8608
gduggal-snapvard	INDEL	I6_15	HG002complexvar	homalt	45.0525	29.6785	93.4732	26.9165	360	853	401	28	27	96.4286
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7230	99.7230	99.7230	60.8884	360	1	360	1	0	0.0000
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	45.8754	35.9281	63.4398	55.1086	360	642	616	355	312	87.8873
gduggal-bwafb	INDEL	D1_5	map_l125_m2_e0	homalt	99.1736	98.9011	99.4475	87.9894	360	4	360	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	73.9449	73.7705	74.1201	54.7329	360	128	358	125	125	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.3789	96.2567	94.5170	61.8146	360	14	362	21	21	100.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.1236	82.5688	83.6858	64.5989	360	76	1108	216	72	33.3333
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	88.3380	89.7756	86.9458	76.1737	360	41	353	53	41	77.3585
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	75.5473	67.1642	86.3216	61.1351	360	176	467	74	64	86.4865
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	61.4072	360	1	360	2	1	50.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	62.7955	360	1	360	2	1	50.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	96.2535	93.7662	98.8764	76.3769	361	24	352	4	3	75.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4490	99.1758	99.7238	84.2814	361	3	361	1	1	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	38.9035	36.0279	42.2780	67.7158	361	641	438	598	312	52.1739
ghariani-varprowl	INDEL	D16_PLUS	HG002compoundhet	het	34.2987	89.1358	21.2349	37.1418	361	44	368	1365	1360	99.6337
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9969	361	0	361	2	1	50.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
jli-custom	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	85.1837	361	3	361	2	2	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.8074	361	0	361	2	1	50.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
cchapple-custom	INDEL	D1_5	map_l125_m2_e1	homalt	98.2283	97.0430	99.4429	83.5246	361	11	357	2	2	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5862	100.0000	99.1758	63.0457	361	0	361	3	1	33.3333
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	63.1098	361	0	361	2	1	50.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7238	100.0000	99.4490	62.9592	361	0	361	2	1	50.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4855	361	3	361	2	2	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	homalt	99.3122	99.1758	99.4490	86.4552	361	3	361	2	2	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	89.7947	82.2323	98.8889	27.1255	361	78	356	4	4	100.0000
ndellapenna-hhga	INDEL	D1_5	map_l125_m2_e0	homalt	99.0398	99.1758	98.9041	85.4408	361	3	361	4	4	100.0000
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.9436	97.8320	98.0556	80.5300	361	8	353	7	7	100.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	64.0961	94.0104	48.6239	70.6199	361	23	371	392	15	3.8265
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	65.1903	73.6735	58.4590	47.5626	361	129	1396	992	627	63.2056
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8617	100.0000	99.7238	62.2523	361	0	361	1	1	100.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.5642	94.2559	87.1508	72.0313	361	22	312	46	20	43.4783
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	62.0275	82.7982	49.5879	79.0744	361	75	361	367	274	74.6594
gduggal-bwaplat	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	69.8222	55.2833	94.7368	83.6277	361	292	360	20	16	80.0000
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	71.8123	94.5170	57.9030	83.9608	362	21	370	269	72	26.7658
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.0108	362	2	362	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	86.1280	362	2	362	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	96.6549	94.0260	99.4350	76.0811	362	23	352	2	1	50.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e0	homalt	99.5873	99.4505	99.7245	83.3867	362	2	362	1	1	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m2_e0	homalt	99.4498	99.4505	99.4490	84.0999	362	2	361	2	2	100.0000

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