PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59801-59850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 74.4494 | 60.3774 | 97.0745 | 67.4459 | 352 | 231 | 365 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| mlin-fermikit | INDEL | D1_5 | segdup | homalt | 98.3264 | 98.3287 | 98.3240 | 93.5215 | 353 | 6 | 352 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0914 | 93.1398 | 75.0000 | 56.9061 | 353 | 26 | 351 | 117 | 113 | 96.5812 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7409 | 97.7839 | 99.7167 | 56.1491 | 353 | 8 | 352 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2428 | 98.3287 | 69.2157 | 47.0954 | 353 | 6 | 353 | 157 | 156 | 99.3631 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0678 | 92.8947 | 99.4652 | 64.2789 | 353 | 27 | 372 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.1628 | 98.3287 | 75.1064 | 48.2379 | 353 | 6 | 353 | 117 | 116 | 99.1453 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4621 | 71.8941 | 99.4667 | 29.5113 | 353 | 138 | 373 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 88.0281 | 84.4498 | 91.9231 | 48.1038 | 353 | 65 | 239 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.5772 | 91.4508 | 67.3585 | 91.9490 | 353 | 33 | 357 | 173 | 20 | 11.5607 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2737 | 91.9271 | 98.8732 | 77.2144 | 353 | 31 | 351 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0664 | 92.8947 | 99.4624 | 64.1618 | 353 | 27 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0664 | 92.8947 | 99.4624 | 64.1618 | 353 | 27 | 370 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.1888 | 96.9780 | 99.4302 | 83.5211 | 353 | 11 | 349 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 5.1263 | 0.0000 | 0.0000 | 353 | 6533 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.4041 | 98.6072 | 75.3191 | 48.5214 | 354 | 5 | 354 | 116 | 115 | 99.1379 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.1753 | 97.7901 | 88.9764 | 85.5927 | 354 | 8 | 226 | 28 | 26 | 92.8571 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5746 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | * | 78.8292 | 68.8716 | 92.1529 | 96.4092 | 354 | 160 | 458 | 39 | 19 | 48.7179 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5181 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.8331 | 79.9097 | 100.0000 | 43.6306 | 354 | 89 | 354 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.5705 | 97.7901 | 76.0656 | 82.2571 | 354 | 8 | 232 | 73 | 71 | 97.2603 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 76.6234 | 0.0000 | 0.0000 | 354 | 108 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdup | homalt | 98.6157 | 98.8858 | 98.3471 | 95.1952 | 355 | 4 | 357 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7136 | 98.0663 | 84.3866 | 84.5224 | 355 | 7 | 227 | 42 | 40 | 95.2381 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 73.7279 | 98.8858 | 58.7748 | 45.3888 | 355 | 4 | 355 | 249 | 247 | 99.1968 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0233 | 98.3380 | 99.7183 | 57.9882 | 355 | 6 | 354 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2977 | 92.4479 | 98.3287 | 77.4356 | 355 | 29 | 353 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | * | 17.4062 | 15.1645 | 20.4258 | 36.2202 | 355 | 1986 | 355 | 1383 | 1372 | 99.2046 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 97.5281 | 95.6989 | 99.4286 | 80.7692 | 356 | 16 | 348 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7796 | 27.0106 | 45.0758 | 47.5149 | 356 | 962 | 357 | 435 | 415 | 95.4023 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 93.6842 | 0.0000 | 0.0000 | 356 | 24 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.2606 | 98.3425 | 85.1301 | 84.5313 | 356 | 6 | 229 | 40 | 38 | 95.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7350 | 92.2280 | 97.3822 | 89.6054 | 356 | 30 | 372 | 10 | 1 | 10.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3952 | 98.3425 | 83.6364 | 84.1954 | 356 | 6 | 230 | 45 | 43 | 95.5556 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.2606 | 98.3425 | 85.1301 | 84.6110 | 356 | 6 | 229 | 40 | 38 | 95.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.4428 | 98.3425 | 85.4478 | 84.5800 | 356 | 6 | 229 | 39 | 37 | 94.8718 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 54.7241 | 37.7119 | 99.6997 | 43.1741 | 356 | 588 | 332 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 74.9014 | 73.1006 | 76.7932 | 54.3353 | 356 | 131 | 364 | 110 | 109 | 99.0909 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3229 | 98.3425 | 83.5125 | 84.0206 | 356 | 6 | 233 | 46 | 44 | 95.6522 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.7513 | 97.8022 | 99.7191 | 80.2770 | 356 | 8 | 355 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.3320 | 92.4675 | 69.4643 | 60.8392 | 356 | 29 | 389 | 171 | 153 | 89.4737 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.7419 | 51.2195 | 100.0000 | 45.5901 | 357 | 340 | 438 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.3363 | 98.8920 | 81.4645 | 58.0614 | 357 | 4 | 356 | 81 | 1 | 1.2346 | |
| qzeng-custom | INDEL | D1_5 | segdup | homalt | 99.3034 | 99.4429 | 99.1643 | 93.1723 | 357 | 2 | 356 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.3490 | 98.0769 | 98.6226 | 89.6286 | 357 | 7 | 358 | 5 | 3 | 60.0000 | |