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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1191 1192 1193 1194 1195 1196 1197 1198 1199 ... 1720 1721 » 59701-59750 / 86044 show all
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
ckim-gatk	SNP	tv	map_l250_m0_e0	*	61.2245	45.0980	95.3039	98.2741	345	420	345	17	0	0.0000
dgrover-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	85.6730	345	4	345	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9242	90.7895	99.4536	60.9392	345	35	364	2	2	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.5718	97.4576	99.7118	70.3672	345	9	346	1	1	100.0000
qzeng-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4570	99.7110	99.2042	74.6128	345	1	374	3	1	33.3333
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7114	99.7110	99.7118	79.0838	345	1	346	1	1	100.0000
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	79.7448	96.1003	68.1467	47.3577	345	14	353	165	141	85.4545
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	23.1772	16.4208	39.3809	42.5111	345	1756	458	705	585	82.9787
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	18.3177	25.9009	14.1693	78.4001	345	987	365	2211	26	1.1759
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	58.3357	89.3782	43.2977	89.0534	345	41	365	478	34	7.1130
gduggal-bwavard	INDEL	D16_PLUS	HG002compoundhet	het	32.7572	85.1852	20.2773	36.0547	345	60	351	1380	1369	99.2029
gduggal-bwafb	INDEL	D1_5	map_l125_m1_e0	homalt	99.1379	98.8539	99.4236	87.3818	345	4	345	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	71.8588	77.9279	66.6667	60.8225	346	98	362	181	179	98.8950
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	40.2163	27.6358	73.8220	36.9637	346	906	141	50	12	24.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2216	346	0	346	1	1	100.0000
jli-custom	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	84.3102	346	3	346	2	2	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	78.4739	346	0	346	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2216	346	0	346	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8553	100.0000	99.7110	78.9538	346	0	345	1	1	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	78.8544	346	0	346	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	77.8772	346	0	346	0	0
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.0206	346	0	346	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4253	99.1404	99.7118	83.2690	346	3	346	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	78.0735	346	0	346	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	78.2390	346	0	346	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.7165	97.7401	99.7126	68.9286	346	8	347	1	1	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.7785	346	3	346	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2216	346	0	346	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2588	346	0	346	1	1	100.0000
ckim-isaac	SNP	tv	map_l250_m0_e0	*	62.1185	45.2288	99.1404	94.1804	346	419	346	3	1	33.3333
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.9065	89.6373	94.2935	88.6839	346	40	347	21	14	66.6667
ckim-isaac	INDEL	D1_5	map_l150_m2_e0	het	79.9092	67.3152	98.3003	91.4899	346	168	347	6	2	33.3333
egarrison-hhga	INDEL	D1_5	map_l125_m1_e0	homalt	99.2826	99.1404	99.4253	85.5781	346	3	346	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	94.1717	93.7669	94.5799	81.8940	346	23	349	20	7	35.0000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	82.8053	79.1762	86.7830	47.8544	346	91	348	53	41	77.3585
ndellapenna-hhga	INDEL	D1_5	map_l125_m1_e0	homalt	98.9986	99.1404	98.8571	84.4858	346	3	346	4	4	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.1842	346	0	346	1	1	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.1717	346	0	346	1	1	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.3484	347	2	347	2	2	100.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	85.2494	347	2	347	2	2	100.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2125	91.3158	99.4565	63.2368	347	33	366	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m1_e0	homalt	99.5696	99.4269	99.7126	82.3350	347	2	347	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0014	98.0226	100.0000	68.5068	347	7	348	0	0
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	68.1729	96.6574	52.6555	45.4921	347	12	347	312	311	99.6795
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2111	91.3158	99.4536	61.2288	347	33	364	2	2	100.0000
ltrigg-rtg1	INDEL	D1_5	map_l125_m1_e0	homalt	99.4261	99.4269	99.4253	83.1477	347	2	346	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	map_l125_m1_e0	homalt	99.0014	99.4269	98.5795	85.3088	347	2	347	5	5	100.0000

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