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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59651-59700 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5769 | 96.6102 | 98.5632 | 70.4835 | 342 | 12 | 343 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 56.1224 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.0475 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.3201 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 56.2738 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5473 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 56.3613 | 343 | 0 | 343 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.9219 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 85.4859 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.5646 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 55.8974 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5317 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2812 | 96.8927 | 99.7101 | 66.5373 | 343 | 11 | 344 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0096 | 96.8927 | 99.1525 | 64.3505 | 343 | 11 | 351 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2734 | 78.1321 | 98.8372 | 30.2231 | 343 | 96 | 340 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5646 | 99.1329 | 100.0000 | 74.3783 | 343 | 3 | 340 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 49.6307 | 343 | 0 | 341 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.8152 | 89.0909 | 63.0112 | 55.9378 | 343 | 42 | 339 | 199 | 180 | 90.4523 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.0062 | 74.2424 | 99.4203 | 29.8780 | 343 | 119 | 343 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 84.4843 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.0361 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D6_15 | map_siren | * | 73.2509 | 67.3870 | 80.2326 | 79.8971 | 343 | 166 | 345 | 85 | 60 | 70.5882 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.0537 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 84.6970 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.0537 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.2671 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5646 | 100.0000 | 99.1329 | 58.6124 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D1_5 | segdup | homalt | 89.2779 | 95.5432 | 83.7838 | 94.1865 | 343 | 16 | 341 | 66 | 59 | 89.3939 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.2671 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5595 | 100.0000 | 99.1228 | 50.4348 | 343 | 0 | 339 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.9462 | 98.2808 | 97.6139 | 87.6142 | 343 | 6 | 450 | 11 | 10 | 90.9091 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 55.0794 | 89.0909 | 39.8618 | 59.0952 | 343 | 42 | 346 | 522 | 495 | 94.8276 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | hetalt | 48.9308 | 33.8598 | 88.1797 | 67.9303 | 343 | 670 | 373 | 50 | 39 | 78.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 48.9473 | 54.4444 | 44.4584 | 86.7689 | 343 | 287 | 353 | 441 | 11 | 2.4943 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 83.7952 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.3020 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0012 | 96.8927 | 99.1354 | 68.0773 | 343 | 11 | 344 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1017 | 90.7652 | 93.4783 | 56.5012 | 344 | 35 | 344 | 24 | 14 | 58.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | het | 55.6184 | 84.9383 | 41.3462 | 47.6949 | 344 | 61 | 258 | 366 | 363 | 99.1803 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7101 | 99.4220 | 100.0000 | 73.1707 | 344 | 2 | 341 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.2573 | 89.3506 | 89.1641 | 59.4561 | 344 | 41 | 864 | 105 | 76 | 72.3810 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1354 | 98.5673 | 99.7101 | 84.2033 | 344 | 5 | 344 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.8217 | 92.4731 | 99.4220 | 87.0023 | 344 | 28 | 344 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 43.2336 | 78.7185 | 29.8002 | 45.0072 | 344 | 93 | 343 | 808 | 773 | 95.6683 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | homalt | 80.1652 | 78.8991 | 81.4727 | 91.7012 | 344 | 92 | 343 | 78 | 53 | 67.9487 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 74.1346 | 69.5565 | 79.3578 | 92.2309 | 345 | 151 | 346 | 90 | 35 | 38.8889 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8553 | 99.7110 | 100.0000 | 75.3957 | 345 | 1 | 342 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5758 | 97.4576 | 99.7199 | 68.4629 | 345 | 9 | 356 | 1 | 1 | 100.0000 | |