PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59001-59050 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
| astatham-gatk | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.2142 | 94.1896 | 53.4687 | 80.5464 | 308 | 19 | 316 | 275 | 253 | 92.0000 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | homalt | 82.3486 | 70.6422 | 98.7055 | 93.2724 | 308 | 128 | 305 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| astatham-gatk | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| jli-custom | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 36.8852 | 308 | 2 | 308 | 0 | 0 | ||
| jli-custom | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 36.8852 | 308 | 2 | 308 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.1412 | 85.3591 | 97.7636 | 73.7636 | 309 | 53 | 306 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.3431 | 83.7398 | 98.0769 | 74.6548 | 309 | 60 | 306 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.7720 | 93.9210 | 22.8614 | 60.8545 | 309 | 20 | 310 | 1046 | 940 | 89.8662 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.1548 | 86.0724 | 96.8750 | 44.7323 | 309 | 50 | 310 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | * | 96.1163 | 93.3535 | 99.0476 | 93.0417 | 309 | 22 | 312 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.4949 | 309 | 0 | 309 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 69.9140 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3569 | 98.7220 | 100.0000 | 35.2201 | 309 | 4 | 309 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.0173 | 99.3569 | 94.7853 | 69.0702 | 309 | 2 | 309 | 17 | 16 | 94.1176 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7156 | 93.6364 | 95.8199 | 71.7786 | 309 | 21 | 298 | 13 | 9 | 69.2308 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.2550 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5625 | 100.0000 | 93.3535 | 69.9091 | 309 | 0 | 309 | 22 | 21 | 95.4545 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 93.2461 | 97.4763 | 89.3678 | 93.8559 | 309 | 8 | 311 | 37 | 2 | 5.4054 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.1139 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8800 | 97.7848 | 100.0000 | 72.8309 | 309 | 7 | 310 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | homalt | 49.1644 | 93.9210 | 33.2972 | 76.0021 | 309 | 20 | 307 | 615 | 607 | 98.6992 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0952 | 100.0000 | 96.2617 | 68.7743 | 309 | 0 | 309 | 12 | 11 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3569 | 98.7220 | 100.0000 | 34.9474 | 309 | 4 | 309 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | HG002complexvar | hetalt | 99.1974 | 99.6774 | 98.7220 | 36.2525 | 309 | 1 | 309 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | HG002complexvar | hetalt | 99.1974 | 99.6774 | 98.7220 | 36.2525 | 309 | 1 | 309 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0066 | 100.0000 | 96.0912 | 61.8634 | 309 | 0 | 295 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.4673 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | tv | HG002complexvar | hetalt | 99.8384 | 99.6774 | 100.0000 | 39.2996 | 309 | 1 | 312 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 69.3798 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | * | HG002complexvar | hetalt | 99.8384 | 99.6774 | 100.0000 | 39.2996 | 309 | 1 | 312 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | * | 87.7841 | 93.3535 | 82.8418 | 98.1723 | 309 | 22 | 309 | 64 | 12 | 18.7500 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.0772 | 83.7398 | 97.4522 | 74.9001 | 309 | 60 | 306 | 8 | 5 | 62.5000 | |
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.8099 | 93.9210 | 22.8907 | 61.1792 | 309 | 20 | 312 | 1051 | 920 | 87.5357 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.4600 | 27.3210 | 77.9449 | 70.7692 | 309 | 822 | 311 | 88 | 69 | 78.4091 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.9377 | 80.6789 | 94.2492 | 85.0311 | 309 | 74 | 295 | 18 | 10 | 55.5556 | |
| gduggal-snapfb | SNP | * | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| astatham-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 70.6592 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9398 | 100.0000 | 95.9627 | 70.5667 | 309 | 0 | 309 | 13 | 13 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7908 | 97.4763 | 98.1073 | 91.0880 | 309 | 8 | 311 | 6 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.9237 | 90.0875 | 98.1013 | 46.7116 | 309 | 34 | 310 | 6 | 1 | 16.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.7521 | 309 | 0 | 309 | 6 | 6 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 98.0992 | 97.4763 | 98.7302 | 91.7883 | 309 | 8 | 311 | 4 | 0 | 0.0000 | |