PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58651-58700 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 76.3371 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.4035 | 79.2818 | 58.6207 | 66.4093 | 287 | 75 | 153 | 108 | 102 | 94.4444 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 76.1047 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.8228 | 92.2830 | 89.4081 | 69.5735 | 287 | 24 | 287 | 34 | 29 | 85.2941 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.9655 | 99.3080 | 98.6254 | 76.4372 | 287 | 2 | 287 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6254 | 99.3080 | 97.9522 | 76.0621 | 287 | 2 | 287 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7917 | 99.3080 | 96.3211 | 91.7060 | 287 | 2 | 288 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 75.4415 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| jli-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 99.1364 | 99.3080 | 98.9655 | 73.9209 | 287 | 2 | 287 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I6_15 | map_siren | * | 96.1474 | 94.0984 | 98.2877 | 81.5307 | 287 | 18 | 287 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.6254 | 99.3080 | 97.9522 | 75.9046 | 287 | 2 | 287 | 6 | 5 | 83.3333 | |
| mlin-fermikit | SNP | * | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.3338 | 91.6933 | 99.2754 | 35.5140 | 287 | 26 | 137 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.5000 | 79.0634 | 97.9522 | 47.2072 | 287 | 76 | 287 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.8884 | 79.2818 | 78.4990 | 70.8284 | 287 | 75 | 387 | 106 | 100 | 94.3396 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0506 | 91.1392 | 99.3127 | 70.7538 | 288 | 28 | 289 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | * | 94.5813 | 94.4262 | 94.7368 | 94.7396 | 288 | 17 | 288 | 16 | 2 | 12.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | het | 74.4186 | 59.7510 | 98.6301 | 96.0087 | 288 | 194 | 288 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | * | 96.6443 | 94.4262 | 98.9691 | 82.7607 | 288 | 17 | 288 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | * | 94.4262 | 94.4262 | 94.4262 | 85.4137 | 288 | 17 | 288 | 17 | 4 | 23.5294 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | * | 93.3423 | 94.4262 | 92.2830 | 95.9948 | 288 | 17 | 287 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 90.8187 | 92.0128 | 89.6552 | 50.4274 | 288 | 25 | 156 | 18 | 14 | 77.7778 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 66.8725 | 51.0638 | 96.8586 | 35.5002 | 288 | 276 | 1480 | 48 | 47 | 97.9167 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.8822 | 83.2370 | 95.3488 | 70.9740 | 288 | 58 | 287 | 14 | 13 | 92.8571 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 89.0200 | 83.2370 | 95.6667 | 70.2085 | 288 | 58 | 287 | 13 | 13 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | * | 95.2066 | 94.4262 | 96.0000 | 86.3014 | 288 | 17 | 288 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | homalt | 93.1153 | 98.9691 | 87.9154 | 78.3801 | 288 | 3 | 291 | 40 | 38 | 95.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | het | 97.7952 | 96.3211 | 99.3151 | 89.0923 | 288 | 11 | 290 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1767 | 75.0649 | 93.2540 | 64.2807 | 289 | 96 | 470 | 34 | 7 | 20.5882 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | het | 97.0787 | 96.6555 | 97.5057 | 86.7845 | 289 | 10 | 430 | 11 | 5 | 45.4545 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | * | 93.0757 | 94.7541 | 91.4557 | 97.2688 | 289 | 16 | 289 | 27 | 2 | 7.4074 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.3112 | 81.6384 | 93.8312 | 58.9880 | 289 | 65 | 289 | 19 | 5 | 26.3158 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 86.7834 | 77.6882 | 98.2906 | 84.8576 | 289 | 83 | 345 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | homalt | 91.1672 | 99.3127 | 84.2566 | 74.7609 | 289 | 2 | 289 | 54 | 53 | 98.1481 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002compoundhet | homalt | 89.0601 | 99.3127 | 80.7263 | 78.1840 | 289 | 2 | 289 | 69 | 69 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | * | 96.6555 | 94.7541 | 98.6348 | 83.9364 | 289 | 16 | 289 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2113 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 92.7769 | 91.1672 | 94.4444 | 92.4314 | 289 | 28 | 289 | 17 | 9 | 52.9412 | |
| asubramanian-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 76.5563 | 99.3127 | 62.2845 | 86.2762 | 289 | 2 | 289 | 175 | 165 | 94.2857 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2813 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.2022 | 93.2476 | 87.3494 | 68.7382 | 290 | 21 | 290 | 42 | 36 | 85.7143 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | homalt | 66.9786 | 99.6564 | 50.4394 | 90.3836 | 290 | 1 | 287 | 282 | 281 | 99.6454 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | * | 93.3027 | 95.0820 | 91.5888 | 95.3992 | 290 | 15 | 294 | 27 | 3 | 11.1111 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 79.0191 | 99.6564 | 65.4628 | 87.5701 | 290 | 1 | 290 | 153 | 152 | 99.3464 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | homalt | 77.2304 | 99.6564 | 63.0435 | 84.6769 | 290 | 1 | 290 | 170 | 169 | 99.4118 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.8810 | 91.7722 | 98.2079 | 71.1479 | 290 | 26 | 274 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | homalt | 93.4091 | 93.8511 | 92.9712 | 64.6727 | 290 | 19 | 291 | 22 | 18 | 81.8182 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | homalt | 79.0191 | 99.6564 | 65.4628 | 87.5701 | 290 | 1 | 290 | 153 | 152 | 99.3464 | |