PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58451-58500 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 89.8612 | 94.8097 | 85.4037 | 66.1053 | 274 | 15 | 275 | 47 | 38 | 80.8511 | |
| gduggal-snapplat | INDEL | * | func_cds | * | 70.8193 | 61.5730 | 83.3333 | 53.5627 | 274 | 171 | 315 | 63 | 1 | 1.5873 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.9666 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002complexvar | homalt | 96.9795 | 94.8097 | 99.2509 | 62.0739 | 274 | 15 | 265 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.3842 | 96.8198 | 100.0000 | 64.1060 | 274 | 9 | 271 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5068 | 76.3231 | 97.2028 | 39.0192 | 274 | 85 | 278 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | het | 97.3300 | 97.8571 | 96.8085 | 89.1371 | 274 | 6 | 273 | 9 | 2 | 22.2222 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | homalt | 94.9357 | 94.5017 | 95.3737 | 63.6951 | 275 | 16 | 268 | 13 | 13 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.7383 | 95.4861 | 98.0237 | 80.6575 | 275 | 13 | 248 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | map_siren | het | 96.8229 | 98.2143 | 95.4704 | 89.1534 | 275 | 5 | 274 | 13 | 2 | 15.3846 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | hetalt | 89.8660 | 82.0896 | 99.2701 | 60.2899 | 275 | 60 | 272 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 75.5641 | 66.4251 | 87.6190 | 72.9614 | 275 | 139 | 276 | 39 | 39 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.8594 | 97.1731 | 80.1749 | 65.9384 | 275 | 8 | 275 | 68 | 62 | 91.1765 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.2269 | 68.5786 | 96.6418 | 53.7532 | 275 | 126 | 518 | 18 | 17 | 94.4444 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | * | 91.6667 | 90.1639 | 93.2203 | 95.5752 | 275 | 30 | 275 | 20 | 6 | 30.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | het | 83.0604 | 98.2143 | 71.9577 | 88.5593 | 275 | 5 | 272 | 106 | 86 | 81.1321 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | * | 93.6968 | 90.1639 | 97.5177 | 81.7829 | 275 | 30 | 275 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2177 | 95.4861 | 96.9605 | 77.6949 | 275 | 13 | 319 | 10 | 8 | 80.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 92.4426 | 88.7097 | 96.5035 | 91.8681 | 275 | 35 | 276 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | * | 94.0200 | 90.1639 | 98.2206 | 86.0753 | 275 | 30 | 276 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | het | 97.3388 | 98.2143 | 96.4789 | 87.3553 | 275 | 5 | 274 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.2318 | 34.6784 | 91.0828 | 15.1351 | 275 | 518 | 143 | 14 | 14 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | het | 83.2073 | 98.2143 | 72.1785 | 87.9583 | 275 | 5 | 275 | 106 | 94 | 88.6792 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.8310 | 97.1731 | 96.4912 | 69.5187 | 275 | 8 | 275 | 10 | 10 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_siren | het | 98.2111 | 98.2143 | 98.2079 | 83.3333 | 275 | 5 | 274 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.0018 | 97.1731 | 96.8310 | 69.5931 | 275 | 8 | 275 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | het | 97.6859 | 98.2143 | 97.1631 | 87.7445 | 275 | 5 | 274 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | homalt | 60.9272 | 43.8792 | 99.6390 | 88.3516 | 276 | 353 | 276 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | homalt | 96.8008 | 97.1831 | 96.4215 | 89.3815 | 276 | 8 | 485 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | * | 94.3636 | 90.4918 | 98.5816 | 93.0781 | 276 | 29 | 278 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.9933 | 95.8333 | 96.1538 | 80.5097 | 276 | 12 | 250 | 10 | 7 | 70.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1346 | 97.5265 | 92.8571 | 69.6281 | 276 | 7 | 273 | 21 | 21 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | het | 93.5679 | 92.3077 | 94.8630 | 91.0374 | 276 | 23 | 277 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5017 | 97.5265 | 93.5593 | 68.9474 | 276 | 7 | 276 | 19 | 19 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.8013 | 95.8333 | 95.7692 | 80.3625 | 276 | 12 | 249 | 11 | 8 | 72.7273 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2859 | 97.5265 | 91.2536 | 67.7934 | 276 | 7 | 313 | 30 | 28 | 93.3333 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | het | 83.2432 | 80.0000 | 86.7606 | 94.6220 | 276 | 69 | 308 | 47 | 12 | 25.5319 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | homalt | 87.6927 | 81.2317 | 95.2703 | 90.2632 | 277 | 64 | 282 | 14 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 59.1835 | 45.3355 | 85.2120 | 34.7503 | 277 | 334 | 824 | 143 | 142 | 99.3007 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 47.3186 | 31.7661 | 92.7083 | 19.3277 | 277 | 595 | 89 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 79.1429 | 0.0000 | 0.0000 | 277 | 73 | 0 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6822 | 97.8799 | 93.5811 | 68.4771 | 277 | 6 | 277 | 19 | 19 | 100.0000 | |