PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57651-57700 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.8888 | 58.1818 | 31.5202 | 57.4228 | 224 | 161 | 226 | 491 | 480 | 97.7597 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 95.5224 | 92.5620 | 98.6784 | 85.2693 | 224 | 18 | 224 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.8301 | 26.7943 | 58.8859 | 77.4791 | 224 | 612 | 222 | 155 | 153 | 98.7097 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9153 | 92.5620 | 97.3913 | 85.7232 | 224 | 18 | 224 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.7238 | 90.6883 | 96.9697 | 48.0899 | 224 | 23 | 448 | 14 | 14 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.8962 | 98.2456 | 99.5556 | 87.8837 | 224 | 4 | 224 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0306 | 96.1373 | 100.0000 | 76.6393 | 224 | 9 | 228 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 86.7690 | 224 | 4 | 224 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.5375 | 81.1594 | 97.3913 | 91.0784 | 224 | 52 | 224 | 6 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 35.7143 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 39.8396 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3618 | 90.6883 | 96.1977 | 79.5490 | 224 | 23 | 253 | 10 | 6 | 60.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 96.1373 | 0.0000 | 0.0000 | 224 | 9 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 93.7269 | 90.6883 | 96.9762 | 47.9190 | 224 | 23 | 449 | 14 | 14 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.8203 | 96.1373 | 99.5633 | 75.6642 | 224 | 9 | 228 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.8953 | 98.2456 | 99.5536 | 87.4228 | 224 | 4 | 223 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 88.1053 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0439 | 96.5665 | 99.5671 | 75.8368 | 225 | 8 | 230 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4644 | 97.8261 | 99.1111 | 60.3873 | 225 | 5 | 223 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.4344 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 88.1053 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.9767 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 29.6875 | 225 | 1 | 225 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 94.0295 | 91.0931 | 97.1616 | 45.1497 | 225 | 22 | 445 | 13 | 13 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 86.5075 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 30.7692 | 225 | 1 | 225 | 0 | 0 | ||
| qzeng-custom | INDEL | * | func_cds | homalt | 97.2362 | 99.5575 | 95.0207 | 31.7280 | 225 | 1 | 229 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.2190 | 92.9752 | 93.4641 | 64.4599 | 225 | 17 | 286 | 20 | 5 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.5746 | 78.1250 | 66.0377 | 64.7450 | 225 | 63 | 210 | 108 | 106 | 98.1481 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 62.6589 | 45.8248 | 99.0431 | 30.1003 | 225 | 266 | 207 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.1329 | 78.1250 | 88.8268 | 67.2461 | 225 | 63 | 318 | 40 | 25 | 62.5000 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | homalt | 81.9370 | 72.8155 | 93.6709 | 46.7416 | 225 | 84 | 222 | 15 | 7 | 46.6667 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | * | 82.2615 | 77.8547 | 87.1972 | 95.7884 | 225 | 64 | 252 | 37 | 10 | 27.0270 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 69.4882 | 58.7467 | 85.0365 | 91.8258 | 225 | 158 | 233 | 41 | 17 | 41.4634 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 73.7705 | 60.1604 | 95.3390 | 57.0128 | 225 | 149 | 225 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.7368 | 90.7258 | 99.1189 | 89.1905 | 225 | 23 | 225 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 83.9718 | 75.2508 | 94.9791 | 93.8067 | 225 | 74 | 227 | 12 | 1 | 8.3333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.2642 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | func_cds | homalt | 99.5575 | 99.5575 | 99.5575 | 33.1361 | 225 | 1 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2533 | 96.5665 | 100.0000 | 76.0711 | 225 | 8 | 229 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 97.8261 | 100.0000 | 66.2162 | 225 | 5 | 225 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 39.2473 | 226 | 0 | 226 | 0 | 0 | ||
| ckim-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 39.4667 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 37.9781 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |