PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57551-57600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | func_cds | homalt | 97.7376 | 95.5752 | 100.0000 | 25.5172 | 216 | 10 | 216 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 48.1114 | 83.3977 | 33.8073 | 56.3749 | 216 | 43 | 214 | 419 | 397 | 94.7494 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 53.9043 | 40.0000 | 82.6255 | 84.1880 | 216 | 324 | 214 | 45 | 36 | 80.0000 | |
| ciseli-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 5.8394 | 0.0000 | 0.0000 | 216 | 3483 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 42.6022 | 32.6316 | 61.3466 | 68.7695 | 217 | 448 | 246 | 155 | 138 | 89.0323 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.8087 | 0.0000 | 0.0000 | 217 | 1074 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4927 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 61.2565 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1590 | 0.0000 | 0.0000 | 217 | 978 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.1538 | 87.8543 | 96.8958 | 47.4971 | 217 | 30 | 437 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | homalt | 80.0982 | 75.0865 | 85.8268 | 71.4607 | 217 | 72 | 218 | 36 | 33 | 91.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 60.5684 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | * | map_siren | hetalt | 93.3352 | 87.8543 | 99.5455 | 87.1345 | 217 | 30 | 219 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | homalt | 77.2242 | 63.2653 | 99.0868 | 80.8734 | 217 | 126 | 217 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | homalt | 64.7761 | 74.5704 | 57.2559 | 81.8487 | 217 | 74 | 217 | 162 | 147 | 90.7407 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.6694 | 81.2734 | 100.0000 | 41.5512 | 217 | 50 | 211 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 65.3614 | 61.2994 | 70.0000 | 68.2377 | 217 | 137 | 217 | 93 | 88 | 94.6237 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.5432 | 62.0000 | 100.0000 | 30.8176 | 217 | 133 | 110 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | * | 89.1561 | 82.1970 | 97.4026 | 85.7934 | 217 | 47 | 225 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9425 | 91.5612 | 94.3662 | 39.3162 | 217 | 20 | 67 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | homalt | 97.9684 | 96.0177 | 100.0000 | 32.8173 | 217 | 9 | 217 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 37.1836 | 23.0932 | 95.3795 | 55.7018 | 218 | 726 | 289 | 14 | 14 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5340 | 95.6140 | 99.5327 | 83.1893 | 218 | 10 | 213 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 31.6999 | 78.9855 | 19.8291 | 89.3462 | 218 | 58 | 232 | 938 | 21 | 2.2388 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.0495 | 93.5622 | 98.6726 | 77.3774 | 218 | 15 | 223 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 49.9912 | 39.7086 | 67.4603 | 80.7634 | 218 | 331 | 255 | 123 | 24 | 19.5122 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.6741 | 93.5622 | 100.0000 | 75.4425 | 218 | 15 | 222 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e0 | * | 75.8372 | 65.8610 | 89.3750 | 97.9118 | 218 | 113 | 286 | 34 | 17 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.3729 | 88.2591 | 96.8889 | 46.8085 | 218 | 29 | 436 | 14 | 14 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.8589 | 78.9855 | 96.4758 | 90.1732 | 218 | 58 | 219 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.1800 | 56.8831 | 34.7973 | 40.5025 | 219 | 166 | 412 | 772 | 591 | 76.5544 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.6004 | 90.4959 | 99.0950 | 89.2457 | 219 | 23 | 219 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | homalt | 64.3172 | 47.4026 | 100.0000 | 93.7819 | 219 | 243 | 219 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | hetalt | 18.8882 | 10.4634 | 96.9432 | 40.6736 | 219 | 1874 | 222 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 59.7518 | 76.0417 | 49.2099 | 69.9253 | 219 | 69 | 218 | 225 | 200 | 88.8889 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.4815 | 93.9914 | 99.1071 | 75.0834 | 219 | 14 | 222 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.4155 | 81.1111 | 94.7826 | 52.9652 | 219 | 51 | 218 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 36.6202 | 25.3766 | 65.7534 | 73.0876 | 219 | 644 | 192 | 100 | 2 | 2.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.9048 | 76.5734 | 97.8261 | 53.6290 | 219 | 67 | 225 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.5393 | 89.0244 | 98.5366 | 84.9486 | 219 | 27 | 202 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 86.2274 | 76.5734 | 98.6667 | 62.1849 | 219 | 67 | 222 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.9048 | 76.5734 | 97.8261 | 53.4413 | 219 | 67 | 225 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.6593 | 88.6640 | 84.7432 | 65.8939 | 219 | 28 | 561 | 101 | 76 | 75.2475 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | * | 55.2333 | 42.6070 | 78.4946 | 86.0290 | 219 | 295 | 219 | 60 | 41 | 68.3333 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |