PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57201-57250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | het | 91.4027 | 96.1905 | 87.0690 | 97.8055 | 202 | 8 | 202 | 30 | 2 | 6.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | het | 91.4414 | 96.2085 | 87.1245 | 97.8577 | 203 | 8 | 203 | 30 | 2 | 6.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6667 | 93.5484 | 100.0000 | 39.7183 | 203 | 14 | 214 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3621 | 99.0244 | 95.7547 | 90.6402 | 203 | 2 | 203 | 9 | 7 | 77.7778 | |
| jlack-gatk | INDEL | * | map_l250_m2_e1 | het | 87.1245 | 96.2085 | 79.6078 | 97.5319 | 203 | 8 | 203 | 52 | 1 | 1.9231 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.7644 | 99.0244 | 89.0351 | 90.6863 | 203 | 2 | 203 | 25 | 23 | 92.0000 | |
| jli-custom | INDEL | * | map_l250_m2_e0 | het | 96.2085 | 96.6667 | 95.7547 | 95.7137 | 203 | 7 | 203 | 9 | 2 | 22.2222 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | het | 95.7547 | 96.2085 | 95.3052 | 96.8873 | 203 | 8 | 203 | 10 | 1 | 10.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | het | 96.4428 | 96.6667 | 96.2199 | 94.7821 | 203 | 7 | 280 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.6501 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2665 | 99.5098 | 99.0244 | 88.9488 | 203 | 1 | 203 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | het | 86.6987 | 97.5962 | 77.9904 | 84.7889 | 203 | 5 | 163 | 46 | 45 | 97.8261 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5962 | 97.1292 | 98.0676 | 74.3176 | 203 | 6 | 203 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2665 | 99.5098 | 99.0244 | 88.6364 | 203 | 1 | 203 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9840 | 203 | 1 | 203 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.6071 | 96.2085 | 78.7482 | 40.9794 | 203 | 8 | 1082 | 292 | 279 | 95.5479 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | het | 85.7861 | 97.5962 | 76.5258 | 84.3382 | 203 | 5 | 163 | 50 | 49 | 98.0000 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | homalt | 75.8563 | 69.7595 | 83.1210 | 54.7550 | 203 | 88 | 261 | 53 | 49 | 92.4528 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | het | 86.0169 | 96.6667 | 77.4809 | 97.4752 | 203 | 7 | 203 | 59 | 10 | 16.9492 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 54.0864 | 41.3442 | 78.1818 | 30.8176 | 203 | 288 | 86 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 46.7522 | 70.4861 | 34.9754 | 65.3140 | 203 | 85 | 284 | 528 | 66 | 12.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | het | 64.7528 | 50.1235 | 91.4414 | 72.1455 | 203 | 202 | 203 | 19 | 18 | 94.7368 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7835 | 99.5098 | 98.0676 | 89.3683 | 203 | 1 | 203 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9009 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I6_15 | HG002compoundhet | het | 86.2400 | 97.5962 | 77.2512 | 84.6657 | 203 | 5 | 163 | 48 | 47 | 97.9167 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7110 | 91.4414 | 96.0961 | 45.1400 | 203 | 19 | 320 | 13 | 11 | 84.6154 | |
| cchapple-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 82.1862 | 0.0000 | 0.0000 | 203 | 44 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.3062 | 98.0769 | 98.5366 | 79.1242 | 204 | 4 | 202 | 3 | 2 | 66.6667 | |
| cchapple-custom | SNP | ti | HG002complexvar | hetalt | 0.0000 | 98.5507 | 0.0000 | 0.0000 | 204 | 3 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3133 | 97.6077 | 99.0291 | 77.5109 | 204 | 5 | 204 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9121 | 94.0092 | 100.0000 | 39.1549 | 204 | 13 | 216 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3990 | 50.8728 | 84.1085 | 55.4404 | 204 | 197 | 217 | 41 | 32 | 78.0488 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.1429 | 96.6825 | 97.6077 | 61.5809 | 204 | 7 | 204 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1485 | 96.6825 | 97.6190 | 55.2239 | 204 | 7 | 205 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | ti | HG002complexvar | hetalt | 98.5507 | 98.5507 | 98.5507 | 42.1788 | 204 | 3 | 204 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | het | 96.4506 | 96.6825 | 96.2199 | 94.9010 | 204 | 7 | 280 | 11 | 5 | 45.4545 | |